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Open data
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Basic information
Entry | ![]() | |||||||||
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Title | WT Pseudomonas phage PP7 capped tube VLP | |||||||||
![]() | sharpened b-factor -47 | |||||||||
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![]() | VLP / PP7 / coat / tube / ![]() | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() | |||||||||
![]() | Kopylov M / Hernandez C / Bobe D / Keshavarz-Joud P / Finn MG | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Pleomorphism in wild-type and engineered PP7 virus-like particles Authors: Keshavarz-Joud P / Kopylov M / Zhao L / Hernandez C / Bobe D / Paraan M / Finn MG | |||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 266.9 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 14.5 KB 14.5 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 14 KB | Display | ![]() |
Images | ![]() | 74.5 KB | ||
Masks | ![]() | 282.6 MB | ![]() | |
Filedesc metadata | ![]() | 4.1 KB | ||
Others | ![]() ![]() ![]() | 140.9 MB 262 MB 262 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
EMDB pages | ![]() ![]() |
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Map
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Annotation | sharpened b-factor -47 | ||||||||||||||||||||
Voxel size | X=Y=Z: 1.076 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Mask #1
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Projections & Slices |
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Density Histograms |
-Additional map: unsharpened
File | emd_44737_additional_1.map | ||||||||||||
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Annotation | unsharpened | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: #1
File | emd_44737_half_map_1.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Half map: #2
File | emd_44737_half_map_2.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
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Sample components
-Entire : C5 capped tube self-assembly of wild type PP7 bacteriophage prote...
Entire | Name: C5 capped tube self-assembly of wild type PP7 bacteriophage protein expressedin E.coli |
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Components |
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-Supramolecule #1: C5 capped tube self-assembly of wild type PP7 bacteriophage prote...
Supramolecule | Name: C5 capped tube self-assembly of wild type PP7 bacteriophage protein expressedin E.coli type: complex / ID: 1 / Parent: 0 |
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Source (natural) | Organism: ![]() |
-Experimental details
-Structure determination
Method | ![]() |
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Aggregation state | particle |
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Sample preparation
Concentration | 1 mg/mL |
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Buffer | pH: 7.5 / Component - Concentration: 0.1 M / Component - Name: PBS |
Grid | Model: Quantifoil R1.2/1.3 / Material: COPPER / Mesh: 300 / Support film - Material: CARBON / Support film - topology: HOLEY / Pretreatment - Type: PLASMA CLEANING / Pretreatment - Time: 30 sec. / Pretreatment - Atmosphere: OTHER / Details: Solarus, 15W |
Vitrification | Cryogen name: ETHANE |
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Electron microscopy
Microscope | FEI TITAN KRIOS |
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Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD![]() |
Image recording | Film or detector model: GATAN K3 (6k x 4k) / Average electron dose: 52.0 e/Å2 |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |