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Yorodumi- EMDB-38969: The focused refinement map (G-protein) of MM07 bound APLNR-Gi1 st... -
+Open data
-Basic information
Entry | Database: EMDB / ID: EMD-38969 | |||||||||
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Title | The focused refinement map (G-protein) of MM07 bound APLNR-Gi1 structure. | |||||||||
Map data | ||||||||||
Sample |
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Keywords | APLNR / MM07 / STRUCTURAL PROTEIN | |||||||||
Biological species | Homo sapiens (human) | |||||||||
Method | single particle reconstruction / cryo EM / Resolution: 2.4 Å | |||||||||
Authors | Wang W / Ji S / Zhang Y | |||||||||
Funding support | 1 items
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Citation | Journal: To Be Published Title: The focused refinement map (Receptor) of the MM07 bound APLNR-Gi1 structure. Authors: Wang W / Ji S / Zhang Y | |||||||||
History |
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-Structure visualization
Supplemental images |
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-Downloads & links
-EMDB archive
Map data | emd_38969.map.gz | 32.9 MB | EMDB map data format | |
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Header (meta data) | emd-38969-v30.xml emd-38969.xml | 11.9 KB 11.9 KB | Display Display | EMDB header |
FSC (resolution estimation) | emd_38969_fsc.xml | 10.2 KB | Display | FSC data file |
Images | emd_38969.png | 53 KB | ||
Masks | emd_38969_msk_1.map | 42.9 MB | Mask map | |
Filedesc metadata | emd-38969.cif.gz | 4.3 KB | ||
Others | emd_38969_half_map_1.map.gz emd_38969_half_map_2.map.gz | 33.1 MB 33 MB | ||
Archive directory | http://ftp.pdbj.org/pub/emdb/structures/EMD-38969 ftp://ftp.pdbj.org/pub/emdb/structures/EMD-38969 | HTTPS FTP |
-Validation report
Summary document | emd_38969_validation.pdf.gz | 925.5 KB | Display | EMDB validaton report |
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Full document | emd_38969_full_validation.pdf.gz | 925.1 KB | Display | |
Data in XML | emd_38969_validation.xml.gz | 13.6 KB | Display | |
Data in CIF | emd_38969_validation.cif.gz | 19.4 KB | Display | |
Arichive directory | https://ftp.pdbj.org/pub/emdb/validation_reports/EMD-38969 ftp://ftp.pdbj.org/pub/emdb/validation_reports/EMD-38969 | HTTPS FTP |
-Related structure data
-Links
EMDB pages | EMDB (EBI/PDBe) / EMDataResource |
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-Map
File | Download / File: emd_38969.map.gz / Format: CCP4 / Size: 42.9 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||
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Voxel size | X=Y=Z: 0.824 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Mask #1
File | emd_38969_msk_1.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Half map: #1
File | emd_38969_half_map_1.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Half map: #2
File | emd_38969_half_map_2.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Sample components
-Entire : Gi protein.
Entire | Name: Gi protein. |
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Components |
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-Supramolecule #1: Gi protein.
Supramolecule | Name: Gi protein. / type: complex / ID: 1 / Parent: 0 / Macromolecule list: all |
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Source (natural) | Organism: Homo sapiens (human) |
-Macromolecule #1: Gi1 protein
Macromolecule | Name: Gi1 protein / type: other / ID: 1 / Classification: other |
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Sequence | String: MGCTLSAEDK AAVERSKMID RNLREDGEKA AREVKLLLLG AGESGKNTIV KQMKIIHEAG YSEEECKQYK AVVYSNTIQS IIAIIRAMGR LKIDFGDSAR ADDARQLFVL AGAAEEGFMT AELAGVIKRL WKDSGVQACF NRSREYQLND SAAYYLNDLD RIAQPNYIPT ...String: MGCTLSAEDK AAVERSKMID RNLREDGEKA AREVKLLLLG AGESGKNTIV KQMKIIHEAG YSEEECKQYK AVVYSNTIQS IIAIIRAMGR LKIDFGDSAR ADDARQLFVL AGAAEEGFMT AELAGVIKRL WKDSGVQACF NRSREYQLND SAAYYLNDLD RIAQPNYIPT QQDVLRTRVK TTGIVETHFT FKDLHFKMFD VGAQRSERKK WIHCFEGVTA IIFCVALSDY DLVLAEDEEM NRMHASMKLF DSICNNKWFT DTSIILFLNK KDLFEEKIKK SPLTICYPEY AGSNTYEEAA AYIQCQFEDL NKRKDTKEIY THFTCSTDTK NVQFVFDAVT DVIIKNNLKD CGLFSELDQL RQEAEQLKNQ IRDARKACAD ATLSQITNNI DPVGRIQMRT RRTLRGHLAK IYAMHWGTDS RLLVSASQDG KLIIWDSYTT NKVHAIPLRS SWVMTCAYAP SGNYVACGGL DNICSIYNLK TREGNVRVSR ELAGHTGYLS CCRFLDDNQI VTSSGDTTCA LWDIETGQQT TTFTGHTGDV MSLSLAPDTR LFVSGACDAS AKLWDVREGM CRQTFTGHES DINAICFFPN GNAFATGSDD ATCRLFDLRA DQELMTYSHD NIICGITSVS FSKSGRLLLA GYDDFNCNVW DALKADRAGV LAGHDNRVSC LGVTDDGMAV ATGSWDSFLK IWNMASNNTA SIAQARKLVE QLKMEANIDR IKVSKAAADL MAYCEAHAKE DPLLTPVPAS ENPFREKKFF CAIL |
-Experimental details
-Structure determination
Method | cryo EM |
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Processing | single particle reconstruction |
Aggregation state | particle |
-Sample preparation
Buffer | pH: 7.5 |
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Vitrification | Cryogen name: ETHANE |
-Electron microscopy
Microscope | FEI TITAN KRIOS |
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Image recording | Film or detector model: GATAN K2 SUMMIT (4k x 4k) / Average electron dose: 50.0 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 1.8 µm / Nominal defocus min: 0.8 µm |
Experimental equipment | Model: Titan Krios / Image courtesy: FEI Company |