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Yorodumi- EMDB-38967: The focused refinement map (Receptor) of the MM07 bound APLNR-Gi1... -
+Open data
-Basic information
Entry | Database: EMDB / ID: EMD-38967 | |||||||||
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Title | The focused refinement map (Receptor) of the MM07 bound APLNR-Gi1 structure. | |||||||||
Map data | ||||||||||
Sample |
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Keywords | APLNR / MM07 / STRUCTURAL PROTEIN | |||||||||
Biological species | Homo sapiens (human) | |||||||||
Method | single particle reconstruction / cryo EM / Resolution: 2.6 Å | |||||||||
Authors | Wang W / Ji S / Zhang Y | |||||||||
Funding support | 1 items
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Citation | Journal: To Be Published Title: The focused refinement map (Receptor) of the MM07 bound APLNR-Gi1 structure. Authors: Wang W / Ji S / Zhang Y | |||||||||
History |
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-Structure visualization
Supplemental images |
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-Downloads & links
-EMDB archive
Map data | emd_38967.map.gz | 32.6 MB | EMDB map data format | |
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Header (meta data) | emd-38967-v30.xml emd-38967.xml | 11.6 KB 11.6 KB | Display Display | EMDB header |
FSC (resolution estimation) | emd_38967_fsc.xml | 10.2 KB | Display | FSC data file |
Images | emd_38967.png | 42.3 KB | ||
Masks | emd_38967_msk_1.map | 42.9 MB | Mask map | |
Filedesc metadata | emd-38967.cif.gz | 4 KB | ||
Others | emd_38967_half_map_1.map.gz emd_38967_half_map_2.map.gz | 33 MB 33 MB | ||
Archive directory | http://ftp.pdbj.org/pub/emdb/structures/EMD-38967 ftp://ftp.pdbj.org/pub/emdb/structures/EMD-38967 | HTTPS FTP |
-Validation report
Summary document | emd_38967_validation.pdf.gz | 768.9 KB | Display | EMDB validaton report |
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Full document | emd_38967_full_validation.pdf.gz | 768.4 KB | Display | |
Data in XML | emd_38967_validation.xml.gz | 13.6 KB | Display | |
Data in CIF | emd_38967_validation.cif.gz | 19.3 KB | Display | |
Arichive directory | https://ftp.pdbj.org/pub/emdb/validation_reports/EMD-38967 ftp://ftp.pdbj.org/pub/emdb/validation_reports/EMD-38967 | HTTPS FTP |
-Related structure data
-Links
EMDB pages | EMDB (EBI/PDBe) / EMDataResource |
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-Map
File | Download / File: emd_38967.map.gz / Format: CCP4 / Size: 42.9 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||
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Voxel size | X=Y=Z: 0.824 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Mask #1
File | emd_38967_msk_1.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Half map: #2
File | emd_38967_half_map_1.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Half map: #1
File | emd_38967_half_map_2.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Sample components
-Entire : MM07 bound APLNR complex.
Entire | Name: MM07 bound APLNR complex. |
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Components |
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-Supramolecule #1: MM07 bound APLNR complex.
Supramolecule | Name: MM07 bound APLNR complex. / type: complex / ID: 1 / Parent: 0 / Macromolecule list: all |
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Source (natural) | Organism: Homo sapiens (human) |
-Macromolecule #1: APLNR
Macromolecule | Name: APLNR / type: other / ID: 1 / Classification: other |
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Sequence | String: MEEGGDFDNY YGADNQSECE YTDWKSSGAL IPAIYMLVFL LGTTGNGLVL WTVFRSSREK RRSADIFIAS LAVADLTFVV TLPLWATYTY RDYDWPFGTF FCKLSSYLIF VNMYASVFCL TGLSFDRYLA IVRPVANARL RLRVSGAVAT AVLWVLAALL AMPVMVLRTT ...String: MEEGGDFDNY YGADNQSECE YTDWKSSGAL IPAIYMLVFL LGTTGNGLVL WTVFRSSREK RRSADIFIAS LAVADLTFVV TLPLWATYTY RDYDWPFGTF FCKLSSYLIF VNMYASVFCL TGLSFDRYLA IVRPVANARL RLRVSGAVAT AVLWVLAALL AMPVMVLRTT GDLENTTKVQ CYMDYSMVAT VSSEWAWEVG LGVSSTTVGF VVPFTIMLTC YFFIAQTIAG HFRKERIEGL RKRRRLLSII VVLVVTFALC WMPYHLVKTL YMLGSLLHWP CDFDLFLMNI FPYCTCISYV NSCLNPFLYA FFDPRFRQAC TSMLCCGQSR CAGTSHSSSG EKSASYSSGH SQGPGPNMGK GGEQMHEKSI PYSQETLVVD |
-Experimental details
-Structure determination
Method | cryo EM |
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Processing | single particle reconstruction |
Aggregation state | particle |
-Sample preparation
Buffer | pH: 7.5 |
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Vitrification | Cryogen name: ETHANE |
-Electron microscopy
Microscope | FEI TITAN KRIOS |
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Image recording | Film or detector model: GATAN K2 SUMMIT (4k x 4k) / Average electron dose: 50.0 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 1.8 µm / Nominal defocus min: 0.8 µm |
Experimental equipment | Model: Titan Krios / Image courtesy: FEI Company |