[English] 日本語
Yorodumi
- EMDB-34867: Cryo-EM Structures and Translocation Mechanism of Crenarchaeota R... -

+
Open data


ID or keywords:

Loading...

-
Basic information

Entry
Database: EMDB / ID: EMD-34867
TitleCryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
Map data
Sample
  • Complex: Sulfolobus acidocaldarius ribosome small sbunit
    • RNA: x 2 types
    • Protein or peptide: x 34 types
  • RNA: x 3 types
  • Protein or peptide: x 29 types
  • Ligand: x 2 types
KeywordsSulfolobus acidocaldarius ribosome small subunit / RIBOSOME
Function / homology
Function and homology information


ribonuclease P activity / tRNA 5'-leader removal / translation elongation factor activity / cytosolic ribosome / large ribosomal subunit rRNA binding / large ribosomal subunit / ribosome biogenesis / regulation of translation / small ribosomal subunit / 5S rRNA binding ...ribonuclease P activity / tRNA 5'-leader removal / translation elongation factor activity / cytosolic ribosome / large ribosomal subunit rRNA binding / large ribosomal subunit / ribosome biogenesis / regulation of translation / small ribosomal subunit / 5S rRNA binding / cytosolic large ribosomal subunit / tRNA binding / rRNA binding / ribosome / structural constituent of ribosome / ribonucleoprotein complex / translation / GTPase activity / GTP binding / RNA binding / zinc ion binding / cytoplasm
Similarity search - Function
Translation elongation factor EFG/EF2, archaeal / Domain of unknown function DUF5622 / Domain of unknown function (DUF5622) / Ribosomal protein L14e / Ribosomal protein L1, archaea / : / Ribosomal protein S27ae / Ribosomal protein L40e, archaeal / : / Ribosomal protein S9, archaeal ...Translation elongation factor EFG/EF2, archaeal / Domain of unknown function DUF5622 / Domain of unknown function (DUF5622) / Ribosomal protein L14e / Ribosomal protein L1, archaea / : / Ribosomal protein S27ae / Ribosomal protein L40e, archaeal / : / Ribosomal protein S9, archaeal / Ribosomal protein S13, archaeal / Ribosomal protein S17, archaeal / Ribosomal protein S6e, archaeal / Ribosomal protein S4, archaeal / Ribosomal protein S12, archaea / Ribosomal protein S3, archaeal / 30S ribosomal protein S3Ae / Ribosomal protein S7, archaeal / Ribosomal protein S19e, archaeal / Ribosomal protein S11, archaeal / Ribosomal protein S2, archaeal / Ribosomal protein S14, type Z, archaeal / Ribosomal protein S8e, archaeal / Ribosomal protein L19e, archaeal / Ribosomal protein L15e, archaeal / Ribosomal protein L30, archaeal / Ribosomal protein L6P, archaea / Ribosomal protein L14P, archaeal / Ribosomal protein L21e, archaeal / Ribosomal protein L18e, archaea / Ribosomal protein L10e, archaea / Ribosomal protein L32e, archaeal / Ribosomal protein L3, archaeal / Ribosomal protein L4, archaea / Ribosomal protein L5, archaeal / Ribosomal protein L7Ae, archaea / Ribosomal protein L24e / Ribosomal protein L30e / Ribosomal protein L2, archaeal-type / Ribosomal L15/L27a, N-terminal / Elongation Factor G, domain II / Elongation Factor G, domain III / Ribosomal protein L23 / Translation elongation factor EFG/EF2, domain IV / Elongation factor G, domain IV / Elongation factor G, domain IV / Elongation factor G C-terminus / Elongation factor EFG, domain V-like / Elongation factor G C-terminus / EF-G domain III/V-like / metallochaperone-like domain / TRASH domain / Ribosomal protein S10, eukaryotic/archaeal / Ribosomal protein S17e, conserved site / Tr-type G domain, conserved site / 40S ribosomal protein S29/30S ribosomal protein S14 type Z / Translational (tr)-type guanine nucleotide-binding (G) domain signature. / Ribosomal protein S27a / Ribosomal protein S27a / Ribosomal protein S3, eukaryotic/archaeal / Ribosomal protein L10e, conserved site / Ribosomal protein L10e / Ribosomal protein S19A/S15e / Ribosomal protein S17e / Ribosomal protein S17e-like superfamily / Ribosomal protein S27a / Ribosomal protein S2, eukaryotic/archaeal / Ribosomal protein S19e / Ribosomal_S19e / Ribosomal protein S5, eukaryotic/archaeal / Ribosomal protein S8e, conserved site / Ribosomal protein L24e, conserved site / Ribosomal protein L34e, conserved site / Ribosomal protein L1, conserved site / Ribosomal S17 / Ribosomal protein L44e / Ribosomal protein S19e / Ribosomal protein S27, zinc-binding domain superfamily / Ribosomal protein L1 / Ribosomal protein S17, archaeal/eukaryotic / Ribosomal protein S27 / Ribosomal protein S28e conserved site / Ribosomal protein S28e / Ribosomal protein L30e, conserved site / Ribosomal protein S23, eukaryotic/archaeal / Ribosomal protein S3Ae / Ribosomal S3Ae family / Ribosomal protein L44 / Ribosomal protein L34Ae / Ribosomal protein S8e / Ribosomal protein S4, KOW domain / Ribosomal protein S5/S7, eukaryotic/archaeal / Ribosomal protein S4e / Ribosomal protein S4e, central region / Ribosomal protein S4e, central domain superfamily / Ribosomal protein S6e / Ribosomal protein S13/S15, N-terminal / Ribosomal protein S15P / Ribosomal S13/S15 N-terminal domain / Ribosomal protein S6e
Similarity search - Domain/homology
Uncharacterized protein / Large ribosomal subunit protein uL24 / Small ribosomal subunit protein eS4 / Small ribosomal subunit protein uS14 / Small ribosomal subunit protein uS8 / Large ribosomal subunit protein uL6 / Large ribosomal subunit protein eL32 / Large ribosomal subunit protein eL19 / Large ribosomal subunit protein uL18 / Small ribosomal subunit protein uS5 ...Uncharacterized protein / Large ribosomal subunit protein uL24 / Small ribosomal subunit protein eS4 / Small ribosomal subunit protein uS14 / Small ribosomal subunit protein uS8 / Large ribosomal subunit protein uL6 / Large ribosomal subunit protein eL32 / Large ribosomal subunit protein eL19 / Large ribosomal subunit protein uL18 / Small ribosomal subunit protein uS5 / Large ribosomal subunit protein uL30 / Large ribosomal subunit protein uL15 / Large ribosomal subunit protein eL34 / Large ribosomal subunit protein eL30 / Small ribosomal subunit protein uS12 / Large ribosomal subunit protein eL39 / Small ribosomal subunit protein uS7 / Small ribosomal subunit protein uS10 / Elongation factor 2 / Large ribosomal subunit protein uL1 / Large ribosomal subunit protein eL20 / Large ribosomal subunit protein eL31 / Small ribosomal subunit protein uS4 / Small ribosomal subunit protein uS9 / Small ribosomal subunit protein uS11 / Small ribosomal subunit protein uS13 / Large ribosomal subunit protein uL13 / Large ribosomal subunit protein eL18 / Small ribosomal subunit protein uS2 / Large ribosomal subunit protein uL5 / Large ribosomal subunit protein eL8 / Small ribosomal subunit protein eS19 / Conserved protein / Small ribosomal subunit protein eS27 / Large ribosomal subunit protein eL42 / Uncharacterized protein / Small ribosomal subunit protein eS24 / Small ribosomal subunit protein eS31 / Small ribosomal subunit protein eS6 / Small ribosomal subunit protein uS15 / Large ribosomal subunit protein eL14 / 50S ribosomal protein L40e / Small ribosomal subunit protein eS8 / Small ribosomal subunit protein eS28 / Large ribosomal subunit protein eL24 / Small ribosomal subunit protein eS17 / Large ribosomal subunit protein eL37 / Large ribosomal subunit protein eL21 / Small ribosomal subunit protein eS1 / Large ribosomal subunit protein eL15 / Large ribosomal subunit protein eL43 / Large ribosomal subunit protein uL3 / Large ribosomal subunit protein uL4 / Large ribosomal subunit protein uL23 / Large ribosomal subunit protein uL2 / Small ribosomal subunit protein uS19 / Large ribosomal subunit protein uL22 / Small ribosomal subunit protein uS3 / Large ribosomal subunit protein uL29 / Small ribosomal subunit protein uS17 / Large ribosomal subunit protein uL14 / Large ribosomal subunit protein uL16
Similarity search - Component
Biological speciesSulfolobus acidocaldarius DSM 639 (acidophilic)
Methodsingle particle reconstruction / cryo EM / Resolution: 4.1 Å
AuthorsWang YH / Zhou J
Funding support China, 1 items
OrganizationGrant numberCountry
National Natural Science Foundation of China (NSFC)31971226 China
CitationJournal: Nucleic Acids Res / Year: 2023
Title: Cryo-electron microscopy structure and translocation mechanism of the crenarchaeal ribosome.
Authors: Ying-Hui Wang / Hong Dai / Ling Zhang / Yun Wu / Jingfen Wang / Chen Wang / Cai-Huang Xu / Hai Hou / Bing Yang / Yongqun Zhu / Xing Zhang / Jie Zhou /
Abstract: Archaeal ribosomes have many domain-specific features; however, our understanding of these structures is limited. We present 10 cryo-electron microscopy (cryo-EM) structures of the archaeal ribosome ...Archaeal ribosomes have many domain-specific features; however, our understanding of these structures is limited. We present 10 cryo-electron microscopy (cryo-EM) structures of the archaeal ribosome from crenarchaeota Sulfolobus acidocaldarius (Sac) at 2.7-5.7 Å resolution. We observed unstable conformations of H68 and h44 of ribosomal RNA (rRNA) in the subunit structures, which may interfere with subunit association. These subunit structures provided models for 12 rRNA expansion segments and 3 novel r-proteins. Furthermore, the 50S-aRF1 complex structure showed the unique domain orientation of aRF1, possibly explaining P-site transfer RNA (tRNA) release after translation termination. Sac 70S complexes were captured in seven distinct steps of the tRNA translocation reaction, confirming conserved structural features during archaeal ribosome translocation. In aEF2-engaged 70S ribosome complexes, 3D classification of cryo-EM data based on 30S head domain identified two new translocation intermediates with 30S head domain tilted 5-6° enabling its disengagement from the translocated tRNA and its release post-translocation. Additionally, we observed conformational changes to aEF2 during ribosome binding and switching from three different states. Our structural and biochemical data provide new insights into archaeal translation and ribosome translocation.
History
DepositionNov 28, 2022-
Header (metadata) releaseSep 20, 2023-
Map releaseSep 20, 2023-
UpdateApr 3, 2024-
Current statusApr 3, 2024Processing site: PDBj / Status: Released

-
Structure visualization

Supplemental images

emd_34867.png

Downloads & links

-
Map

FileDownload / File: emd_34867.map.gz / Format: CCP4 / Size: 209.3 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
Voxel sizeX=Y=Z: 1.087 Å
Density
Contour LevelBy AUTHOR: 0.33
Minimum - Maximum-0.50721174 - 1.25776
Average (Standard dev.)0.009609065 (±0.09800317)
SymmetrySpace group: 1
Details

EMDB XML:

Map geometry
Axis orderXYZ
Origin000
Dimensions380380380
Spacing380380380
CellA=B=C: 413.06 Å
α=β=γ: 90.0 °

-
Supplemental data

-
Half map: #2

Fileemd_34867_half_map_1.map
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

-
Half map: #1

Fileemd_34867_half_map_2.map
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

-
Sample components

+
Entire : Sulfolobus acidocaldarius ribosome small sbunit

EntireName: Sulfolobus acidocaldarius ribosome small sbunit
Components
  • Complex: Sulfolobus acidocaldarius ribosome small sbunit
    • RNA: 23s rRNA (3000-MER)
    • RNA: 5s rRNA (122-MER)
    • Protein or peptide: 50S ribosomal protein L2
    • Protein or peptide: 50S ribosomal protein L3
    • Protein or peptide: 50S ribosomal protein L4
    • Protein or peptide: 50S ribosomal protein L5
    • Protein or peptide: 50S ribosomal protein L6
    • Protein or peptide: 50S ribosomal protein L18AeRibosome
    • Protein or peptide: 50S ribosomal protein L10eRibosome
    • Protein or peptide: 50S ribosomal protein L13
    • Protein or peptide: 50S ribosomal protein L14eRibosome
    • Protein or peptide: 50S ribosomal protein L14
    • Protein or peptide: 50S ribosomal protein L15eRibosome
    • Protein or peptide: 50S ribosomal protein L18eRibosome
    • Protein or peptide: 50S ribosomal protein L18
    • Protein or peptide: 50S ribosomal protein L19eRibosome
    • Protein or peptide: 50S ribosomal protein L22
    • Protein or peptide: 50S ribosomal protein L23
    • Protein or peptide: 50S ribosomal protein L24eRibosome
    • Protein or peptide: 50S ribosomal protein L24
    • Protein or peptide: 50S ribosomal protein L29
    • Protein or peptide: 50S ribosomal protein L30eRibosome
    • Protein or peptide: 50S ribosomal protein L30
    • Protein or peptide: 50S ribosomal protein L31eRibosome
    • Protein or peptide: 50S ribosomal protein L32eRibosome
    • Protein or peptide: 50S ribosomal protein L34eRibosome
    • Protein or peptide: 50S ribosomal protein L37AeRibosome
    • Protein or peptide: 50S ribosomal protein L37eRibosome
    • Protein or peptide: 50S ribosomal protein L39eRibosome
    • Protein or peptide: 50S ribosomal protein L40ERibosome
    • Protein or peptide: 50S ribosomal protein L44eRibosome
    • Protein or peptide: 50S ribosomal protein L7AeRibosome
    • Protein or peptide: 50S ribosomal protein L15
    • Protein or peptide: 50S ribosomal protein L21eRibosome
    • Protein or peptide: DUF2280 domain-containing protein
    • Protein or peptide: Conserved proteinConservation
  • RNA: 16s rRNA (1493-MER)
  • RNA: tRNA (76-MER)
  • RNA: mRNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')
  • Protein or peptide: Elongation factor 2EEF2
  • Protein or peptide: 50S ribosomal protein L47ARibosome
  • Protein or peptide: 50S ribosomal protein L1
  • Protein or peptide: 30S ribosomal protein S3
  • Protein or peptide: 30S ribosomal protein S7
  • Protein or peptide: 30S ribosomal protein S10
  • Protein or peptide: 30S ribosomal protein S13
  • Protein or peptide: 30S ribosomal protein S14 type ZRibosome
  • Protein or peptide: 30S ribosomal protein S17eRibosome
  • Protein or peptide: 30S ribosomal protein S19eRibosome
  • Protein or peptide: 30S ribosomal protein S19
  • Protein or peptide: 30S ribosomal protein S9
  • Protein or peptide: 30S ribosomal protein S28eRibosome
  • Protein or peptide: 30S ribosomal protein S27aeRibosome
  • Protein or peptide: 30S ribosomal protein S2
  • Protein or peptide: 30S ribosomal protein S4eRibosome
  • Protein or peptide: 30S ribosomal protein S4
  • Protein or peptide: 30S ribosomal protein S5
  • Protein or peptide: 30S ribosomal protein S6eRibosome
  • Protein or peptide: 30S ribosomal protein S8eRibosome
  • Protein or peptide: 30S ribosomal protein S8
  • Protein or peptide: 30S ribosomal protein S11
  • Protein or peptide: 30S ribosomal protein S12
  • Protein or peptide: 30S ribosomal protein S15
  • Protein or peptide: 30S ribosomal protein S17
  • Protein or peptide: 30S ribosomal protein S24eRibosome
  • Protein or peptide: 30S ribosomal protein S27eRibosome
  • Protein or peptide: 30S ribosomal protein S3AeRibosome
  • Protein or peptide: PHE-PHE-PHE-PHE-PHE-PHE
  • Ligand: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
  • Ligand: UNKNOWN

+
Supramolecule #1: Sulfolobus acidocaldarius ribosome small sbunit

SupramoleculeName: Sulfolobus acidocaldarius ribosome small sbunit / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1, #4-#38
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)

+
Macromolecule #1: 23s rRNA (3000-MER)

MacromoleculeName: 23s rRNA (3000-MER) / type: rna / ID: 1 / Number of copies: 1
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 980.552312 KDa
SequenceString: GCCGAAGCCU CCCGGUGGAU GGCUCGGCUC GGGCACCGAA GAAGGGCGCG GCAAGCAGCG AAAUGCUCGG GUGAGGCGCA AGCAGCCGU UGACCCCGAG GUCCCCUAAU GGGAUAUCCU GCCGGGUUUC CGGCGCUCCC GGUUUAUAAC UGGGAGUGGG A ACCCCCCG ...String:
GCCGAAGCCU CCCGGUGGAU GGCUCGGCUC GGGCACCGAA GAAGGGCGCG GCAAGCAGCG AAAUGCUCGG GUGAGGCGCA AGCAGCCGU UGACCCCGAG GUCCCCUAAU GGGAUAUCCU GCCGGGUUUC CGGCGCUCCC GGUUUAUAAC UGGGAGUGGG A ACCCCCCG AACGGAAACA UCUUAGUAGG GGGAGGAAAA GAAAUCAAUU GAGAUCCCCU GAGUAGGGGC GACCGAAAGG GG GACAGCC CAAACUAAAC CUGCCGAUGA UAAGUCGGUG GGGAUGUGGU GUUACGACCU CUAGCCUGAG GUUCGACCUC GGC UUUCCU AACCUAUCUA GCCGAACUCC CCUGGAACGG GGGGCCAUAG AGGGUGAAAG CCCCGUAGGC UAAAGAUAGG UGGA AAGUG GCUAGAGGUA GAGUACCAUC CCCUGGUUUG GGGGUGGGAA GUUAGGGGAC ACGUGCCUCU AAGGCUAAAU AUGUC CCGA GACCGAUAGC AAACUAAGUA CCGUGAGGGA AAGCUGAAAA GAACCCCGGA AGGGGGAGUG CAAAGAGCCU GAAACC GGG UGGUUAUACA GGGUGUGGCU CGAAAGAAGU GAACCCUUCC GAAGGAAAGG GGCGCAAGCC CUUAGUACGA GGAAGGG CG AUCGGGGUCA CGCCUUUCGU CUUGAAACAC GGGCCGGGGA GUUCACAUCA GUGGCGAGCU UAAGGAGAUU AUCUCCGA A GGCAUAGGGA AACCAAGUGC CCGCAGCCUA GUUUCUAGGC GAGGGGCAGG GUCUGUCAGG GCCUGAAGCC ACUGAUGUG AGGCUAGAAA CCGGGCGAUC UAGUCCGGGG CAGGCUGAAG GUGGGGGAAA CCCCACUGGA GGGCCGAAUA GGGGUUCUGA CGUGCAAUU CGUUCCCUUG ACCUCGGACU AGGGGCAAAA GACCAAUCUA GCCCGGUGAU AGCUAGUUCC CCCCGAAAUG C GUCCUAGC GCAGCCUCCC UAAAGGCAGC UCGCGGGGUA GAGUGACAGA UCGGGGGCUC CAGGCGAAAG CCUGGGGCUU CC GGUCUAA CUCCGAACCC ACGAGCGCCG AAGAAGGGGG GAGUGGGUCA CUCGGCGUAA GGUUGGGUGG CAAAAGGGGA ACA ACCCAG ACCUGGGUUA AGGCCCCAAA GUCCCGGCUA AGUGCCAACG AAAAGGCGUC UCCAGCCUUA GACAGCGGGA AGGU GGGCC CAGCAGCAGC CAUCCUCUAA GGAGUGCGUA ACAGCUCACC CGCCGAGGCU GGAGGCCCUA AAGAUUGGUC GGGGC UCAA GCCGGGCGCC GAGACCCAGG AGGGGGUCUC UACUAGAGAU CCUCUGGUAG GGGGGCGCUG UGAUGGGGUA GAAGGU GGG UCGUGAGAUC CACUGGACCC GUCACAGGUG CAGAUCCCGG CGGUAGUAAC AGCGAAGGGG GGUGAGAAUC CCCCUCG CC GGAAGGGCAA GGGUUUCCCG GCAACGUUCG UCAGCCGGGA GUUAGCCGGU CCUAAGGUAG GGCCUAAUAG GUACCUAC C GAAAGGGAAA GGGGUUAACA UUCCCCUGCC UCCCGGGUAG GUGCGGUAAC GCAAGCCAGA CUCCUGACGG AUUGGGGUA GGGAGAGUAG GACCACCGUC CUACCCAAGC ACUCAAGCCC UUGGAGAGCC GUAACGGUGA GAAGAGGGCG AAGGUGUGAU GGGCCUUCC GUUAGGAGGG UUCUCCUGAU CCCUAGUCCC CAUGAAAAGG GAGUCUGGAA CGAUCCCGGG AGACCGUACC U AGAACCGA CACUGGUGCC CCUGGGUGAG AAGCCCAAGG CGUCUGAGGG GUAACCCAGG CUAGGGAACU CGGCAAAUUA GC CCCGUAA CUUCGGGAGA AGGGGUGCCU AUCGUGGUUU AACAAAGCCA CGAUAGGUCG CAGUGACCAG AGGGACCUGA CUG UUUAAU AAAAACAUAG GUCCCCGCUA GCCCGAAAGG GUGUGUACGG GGGCUAAAUC CUGGCCACUG GUGGUUGGUU AAAU CCGGG UUCAACCGGG CGAAGCCCCA CCGAAGGCCG GGGGUAACUC UGACCCUCUU AAGGUAGCCA AAUGCCUUGC CGGGU AAGU UCCGGCGCGC AUGAAUGGAU CAACGCGGUC CCUACUGUCC CAGCCUGGGG CCUCGUGAAC GCCCUGAGCC GGUGCA CAG UCCGGCAUCU CCCUACACCG AGAGAAGACC CCGUGGAGCU UCACCGCAGC CUGGCGUUGU CCCUCGGGCG UUUAUGC GU AGAGUAGGUG GGAGGGGUCG AACCUGUCCU UUCGGGGGCA GGGGACCCGA AAGUGAAACA CCACCCAUGG ACGCUCGA G GGACUAACCU CUCGAAAGAG AGGAACAACG UCAGGUGGGC GGUUCGGCUG GGGCGGCACU CCCGCGAAAA GAUAACACG GGAGCCCAAA GGUCGGCUCA GGCGGUACAG AACGCCGCCG UAGAGCGCAA GGGCAAAAGC CGGCCUGACG UGACCCUUCC AAGUACGGG GUCACGACGC GAAAGCGGGG CCUAGCGAAC GCUCGUGCCC CCACACGUGG GGGCCGGGCA UGACAGAAAA G UUACCCCG GGGAUAACAG GGUCGUCGCG GGCGAGAGCU CACAUCGACC CCGCGGUUUG CUACAUCGAU GUCGGCUCUU CC CACCCUG GAGGUGCAGC UGCCUCCAAG GGUAGGGCUG CCCGCCCGUU AAAGGGGAGC GUGAGCUGGG UUUAGACCGU CGC GAGACA GGUCGGACUC UAAGGGUAGG GAGUGCGGAC CGCUUGAGGG GAAGGAACCC CUAGUACGAG AGGAACAGGG UUCC GGGGC CUCCAGUUUA CCGGUUGUCC GGUAGGGCAA UGCCGGGCAG CCGCGCCCUG AGGGGUAACC GCUGAAAGCA UCUAA GCGG GAACCCCUCC CCUAAAAGAG GCGGUCAGGC GUUAGCCGGG GCCUUCCCCU AGAAGAGGGG GUUGAUGGGG UGGGGA UGU AAGCUCCAAG GUUGUAAGAC CGAGGAGUUU AGUCCGCCAC UCCCAAUCAG GCUCCCCCC

+
Macromolecule #2: 16s rRNA (1493-MER)

MacromoleculeName: 16s rRNA (1493-MER) / type: rna / ID: 2 / Number of copies: 1
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 487.531875 KDa
SequenceString: CGCCCCGAUU CCGGUUGAUC CUGCCGGACC CGACCGCUAU CGGGGUAGGG AUAAGCCAUG GGAGUCUUAC ACUCCCGGGU AAGGGAGUG UGGCGGACGG CUGAGUAACA CGUGGCUAAC CUACCCUCGG GACGGGGAUA ACCCCGGGAA ACUGGGGAUA A UCCCCGAU ...String:
CGCCCCGAUU CCGGUUGAUC CUGCCGGACC CGACCGCUAU CGGGGUAGGG AUAAGCCAUG GGAGUCUUAC ACUCCCGGGU AAGGGAGUG UGGCGGACGG CUGAGUAACA CGUGGCUAAC CUACCCUCGG GACGGGGAUA ACCCCGGGAA ACUGGGGAUA A UCCCCGAU AGGGAAGGAG UCCUGGAAUG GUUCCUUCCC UAAAGGGCUA UAGGCUAUUU CCCGUUUGUA GCCGCCCGAG GA UGGGGCU ACGGCCCAUC AGGCUGUCGG UGGGGUAAAG GCCCACCGAA CCUAUAACGG GUAGGGGCCG UGGAAGCGGG AGC CUCCAG UUGGGCACUG AGACAAGGGC CCAGGCCCUA CGGGGCGCAC CAGGCGCGAA ACGUCCCCAA UGCGCGAAAG CGUG AGGGC GCUACCCCGA GUGCCUCCGC AAGGAGGCUU UUCCCCGCUC UAAAAAGGCG GGGGAAUAAG CGGGGGGCAA GUCUG GUGU CAGCCGCCGC GGUAAUACCA GCUCCGCGAG UGGUCGGGGU GAUUACUGGG CCUAAAGCGC CUGUAGCCGG CCCACC AAG UCGCCCCUUA AAGUCCCCGG CUCAACCGGG GAACUGGGGG CGAUACUGGU GGGCUAGGGG GCGGGAGAGG CGGGGGG UA CUCCCGGAGU AGGGGCGAAA UCCUUAGAUA CCGGGAGGAC CACCAGUGGC GGAAGCGCCC CGCUAGAACG CGCCCGAC G GUGAGAGGCG AAAGCCGGGG CAGCAAACGG GAUUAGAUAC CCCGGUAGUC CCGGCUGUAA ACGAUGCGGG CUAGGUGUC GAGUAGGCUU AGAGCCUACU CGGUGCCGCA GGGAAGCCGU UAAGCCCGCC GCCUGGGGAG UACGGUCGCA AGACUGAAAC UUAAAGGAA UUGGCGGGGG AGCACCACAA GGGGUGGAAC CUGCGGCUCA AUUGGAGUCA ACGCCUGGAA UCUUACCGGG G GAGACCGC AGUAUGACGG CCAGGCUAAC GACCUUGCCU GACUCGCGGA GAGGAGGUGC AUGGCCGUCG CCAGCUCGUG UU GUGAAAU GUCCGGUUAA GUCCGGCAAC GAGCGAGACC CCCACCCCUA GUUGGUAUUC UGGACUCCGG UCCAGAACCA CAC UAGGGG GACUGCCGGC GUAAGCCGGA GGAAGGAGGG GGCCACGGCA GGUCAGCAUG CCCCGAAACU CCCGGGCCGC ACGC GGGUU ACAAUGGCAG GGACAACGGG AUGCUACCUC GAAAGGGGGA GCCAAUCCUU AAACCCUGCC GCAGUUGGGA UCGAG GGCU GAAACCCGCC CUCGUGAACG AGGAAUCCCU AGUAACCGCG GGUCAACAAC CCGCGGUGAA UACGUCCCUG CUCCUU GCA CACACCGCCC GUCGCUCCAC CCGAGCGAGA AAGGGGUGAG GUCCCUUGCG AUAAGUGGGG GAUCGAACUC CUUUCCC GC GAGGGGGGAG AAGUCGUAAC AAGGUAGCCG UAGGGGAACC UGCGGCUGGA UCACCUCAUA U

+
Macromolecule #4: 5s rRNA (122-MER)

MacromoleculeName: 5s rRNA (122-MER) / type: rna / ID: 4 / Number of copies: 1
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 39.440457 KDa
SequenceString:
UGCCCACCCG GUCAUAGUGA GCGGGUAACA CCCGGACUCG UUUCGAACCC GGAAGUUAAG CCGCUCACGU CAGAGGGGCC GUGGGAUCC GAGAGGGCCC GCAGCCUCUC UGAGCUGGGA UGG

GENBANK: GENBANK: CP000077.1

+
Macromolecule #66: tRNA (76-MER)

MacromoleculeName: tRNA (76-MER) / type: rna / ID: 66 / Number of copies: 2
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 24.485539 KDa
SequenceString:
GCCCGGAUAG CUCAGUCGGU AGAGCAGGGG AUUGAAAAUC CCCGUGUCCU UGGUUCGAUU CCGAGUCCGG GCACCA

+
Macromolecule #67: mRNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')

MacromoleculeName: mRNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')
type: rna / ID: 67 / Number of copies: 1
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 3.935198 KDa
SequenceString:
UUUUUUUUUU UUU

+
Macromolecule #3: Elongation factor 2

MacromoleculeName: Elongation factor 2 / type: protein_or_peptide / ID: 3 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 81.106492 KDa
SequenceString: VEQVLSLMKD VTRVRNIGII AHVDHGKTTT SDTLLAASGI ISQKVAGEAL ALDYLSVEQQ RGITVKAANI SLYHEIDGKG YVINLIDTP GHVDFSGRVT RSLRVLDGSI VVIDAVEGIM TQTETVLRQS LEERVRPILF INKVDRLIKE LKLSSQEIQK R LIDLIIEV ...String:
VEQVLSLMKD VTRVRNIGII AHVDHGKTTT SDTLLAASGI ISQKVAGEAL ALDYLSVEQQ RGITVKAANI SLYHEIDGKG YVINLIDTP GHVDFSGRVT RSLRVLDGSI VVIDAVEGIM TQTETVLRQS LEERVRPILF INKVDRLIKE LKLSSQEIQK R LIDLIIEV NNLIETYGEP EFKDQWKIKP ELGNVVFGSA KDKWGFSVPM AGKRGVKFSD VVNAYTSGDK AKIEELASKV PI HEALLDA VIKFVPNPRD SQKYRIPKIW KGDLDSEIAK AMINADPNGP IVMMINDMKV DPHAGLVATG RVFSGTLRAG EEV WLVNAK RQQRILQVSL YMGAIRELAE EIPVGNIAAA LGMDAARSGE TGVDIRFKDS VLGSFEKLHY ISEPVVTISV EPRN PKDLT KMIDALRKLS IEDSNLVVKI NEETGEYLLS GMGFLHLEVS LQLLKENYGL DVVTTPPIVV YRESIRNKSQ VFEGK SPNK HNKLYISVEP LNNQTIDLIA NGTIKEDMDN KEMAKILRDQ AEWDYDEAKK IVAIDENINV FIDATSGVQH LREIMD TLL QGFRLAMKEG PLAFEPVRGV KVVLHDAVVH EDPAHRGPAQ LYPAVRNAIF AGILTSKPTL LEPLQKLDIR IPMEYLG NV TAVITRKRGK VINVVQTGNV ARVYAEIPVG ESFELASELR ASSAGRAFWG TEFSRWAPVP DSILVDLIMK IRERKGKP K QLPKVEDF

UniProtKB: Elongation factor 2

+
Macromolecule #5: 50S ribosomal protein L2

MacromoleculeName: 50S ribosomal protein L2 / type: protein_or_peptide / ID: 5 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 24.88175 KDa
SequenceString: GKKLLQQRAG RGGINFRSPS WRRVGPARYP NIEGDHKGKI IDILHNPGVT APVVKVKLDN GLQFYIPAVQ GVAVGQEISI GKNATISNG NIVEVGQLPE GTVICNVEKL KGDGGKFARA AGSYAVISGK AGNKVLIKLS SEKIVEVSQN ARATVGIIAG G GFVEKPLL ...String:
GKKLLQQRAG RGGINFRSPS WRRVGPARYP NIEGDHKGKI IDILHNPGVT APVVKVKLDN GLQFYIPAVQ GVAVGQEISI GKNATISNG NIVEVGQLPE GTVICNVEKL KGDGGKFARA AGSYAVISGK AGNKVLIKLS SEKIVEVSQN ARATVGIIAG G GFVEKPLL KAGNNYWKYR VRAVKWPVVR GVAMNAVSHP HGGGLHQSVS RPSTVSRNAP PGRKVGHIAS RRTGRR

UniProtKB: Large ribosomal subunit protein uL2

+
Macromolecule #6: 50S ribosomal protein L3

MacromoleculeName: 50S ribosomal protein L3 / type: protein_or_peptide / ID: 6 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 38.18634 KDa
SequenceString: RKLSSPRRGS AGLRPRKRAD EILPTPKNWP LVNLKEPKLL GFIGYKAGMT HVYMIDDKPT SPNYGKEVYT PVTIVESPPI LGLALRAYH IDSKGELSVL VDYWANFEEG SLKYLKRKIT SLKVDSSKMK EKLDLIQKNL NNITYMRLLV STQPWLVPSL G KKRPEIVE ...String:
RKLSSPRRGS AGLRPRKRAD EILPTPKNWP LVNLKEPKLL GFIGYKAGMT HVYMIDDKPT SPNYGKEVYT PVTIVESPPI LGLALRAYH IDSKGELSVL VDYWANFEEG SLKYLKRKIT SLKVDSSKMK EKLDLIQKNL NNITYMRLLV STQPWLVPSL G KKRPEIVE IQIGGGSIQD QLNYGLSLLG KQIPVRDVFR EGQLTDIIGV TKGKGFQGVI KRYSVVEFPR WHKHRKGSRK IG ARGPSIS TPSYVPQPGQ LGFHRRTEYN KRIIKIGDNV NEINPAGGIV NYGLVKNTYL VIEGSVLGSR KRPLFLRYPI RPS WSPESA PKITYVNLAS QQG

UniProtKB: Large ribosomal subunit protein uL3

+
Macromolecule #7: 50S ribosomal protein L4

MacromoleculeName: 50S ribosomal protein L4 / type: protein_or_peptide / ID: 7 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 27.357971 KDa
SequenceString: KVSVLDLKGN QLEEIELPLF FSYPVRKDLI RRVFLSEFTK SLQPKGRDPL AGKRTSALSF GINLGIARVP RVKGSGEAAL APNTVGGRL AFPPTTEKRL VEEVNLKEKK LGIISALAAT ADPNFVKARG HRFTSNNVPI ILVDDFENIS KAKEIMDILK S IGVVDDIK ...String:
KVSVLDLKGN QLEEIELPLF FSYPVRKDLI RRVFLSEFTK SLQPKGRDPL AGKRTSALSF GINLGIARVP RVKGSGEAAL APNTVGGRL AFPPTTEKRL VEEVNLKEKK LGIISALAAT ADPNFVKARG HRFTSNNVPI ILVDDFENIS KAKEIMDILK S IGVVDDIK RVKESKGVRA GKGKMRGRRY QIAKGPLIVV SNHKSPVVES ASNIPGVNVV SANLVSVIHL APGGHPGRLT IY TKSSINI LRQR

UniProtKB: Large ribosomal subunit protein uL4

+
Macromolecule #8: 50S ribosomal protein L5

MacromoleculeName: 50S ribosomal protein L5 / type: protein_or_peptide / ID: 8 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 19.095418 KDa
SequenceString:
KENVMRRVVL DKVTVNIGVG ESGERLQKAY QLVQELTGVK PVYTKGRKSI REFGVRKGAP IGVKATLRRQ AAVEFLKKVL PAVNFRLKQ SSFDNYGNVS FGIAEHVLIP GTRYDPEIGI FGMDVAITLV RPGYRTMKRK RKKASIPRRH RVTKEEAINF M KENFNVTI

UniProtKB: Large ribosomal subunit protein uL5

+
Macromolecule #9: 50S ribosomal protein L6

MacromoleculeName: 50S ribosomal protein L6 / type: protein_or_peptide / ID: 9 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 20.30567 KDa
SequenceString:
LKAAYIREEI QIPDKVKVSL ENNVLKVKGP KGEVIKDFSY AKGIRIQLNE GKIILETTFA DRRKKALLYS IIAHIKNMIT GTINGYRYY LKVISTHFPI SVKVSGDEVQ VSNLIGEKNI RRAKILPGVK VTVKGEDIVV EGSDIYNVAQ TAANIESSTK I VGYDRRIF SDGIYIYKKE VIG

UniProtKB: Large ribosomal subunit protein uL6

+
Macromolecule #10: 50S ribosomal protein L18Ae

MacromoleculeName: 50S ribosomal protein L18Ae / type: protein_or_peptide / ID: 10 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 8.926346 KDa
SequenceString:
VKIFMVRGTA IFSASRFPTS QKFTKYVRAL NEKQAIEYIY SQLGGKNKIK RYNIHIQEIK EVKEDEITDK TIRDLA

UniProtKB: Large ribosomal subunit protein eL20

+
Macromolecule #11: 50S ribosomal protein L10e

MacromoleculeName: 50S ribosomal protein L10e / type: protein_or_peptide / ID: 11 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 18.670025 KDa
SequenceString:
RPGRCYRKFS GPAYTRREYI PGIPMPKITK FVMGNVNGDY DYELRLITTE KGQIRHNALE AARVIALKYL SKKLASEQNF ALVVTKYPH HVIRENKMMA FAGADRLQDG MRLSFGKPIG TAARLEKLGE LVMYVRVKKE HLEAAKEALK IASSKLPIRT K IEIS

UniProtKB: Large ribosomal subunit protein uL16

+
Macromolecule #12: 50S ribosomal protein L13

MacromoleculeName: 50S ribosomal protein L13 / type: protein_or_peptide / ID: 12 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 15.808851 KDa
SequenceString:
VIVDATNQIL GRMSTHIAKL LKSGKKVYVV NAEKAIISGP RSRVLEGYSL LFTVKTMQNP YRQGIRRPRN PINIVKRTVR GMLPKNKLG KQIYRNLKAY IGIPKELEGK SMIRFDDADV SRLKGKYITV AELSRLLGGL K

UniProtKB: Large ribosomal subunit protein uL13

+
Macromolecule #13: 50S ribosomal protein L14e

MacromoleculeName: 50S ribosomal protein L14e / type: protein_or_peptide / ID: 13 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 9.559101 KDa
SequenceString:
AIEIGRICVK TRGREAGKKC VIVDIIDSNF VLVTGPKEIN GVKRRRVNIL HIEPTDKKVE INKGATDQEV KQAIEQSGLT DFIKEA

UniProtKB: Large ribosomal subunit protein eL14

+
Macromolecule #14: 50S ribosomal protein L14

MacromoleculeName: 50S ribosomal protein L14 / type: protein_or_peptide / ID: 14 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 14.707115 KDa
SequenceString:
MNVLGSRKGF TPALQHNSSV VVADNSGAKE AVIIGIYGYR GVLRRVPFAN IADLVMVSVR KGSPDVRKQK FKAVIVRQRM PFRRPDGTW ISFEDNAVVI INPDGTPKGT EVRGPIAREA AERWPKIASV ATMVI

UniProtKB: Large ribosomal subunit protein uL14

+
Macromolecule #15: 50S ribosomal protein L15e

MacromoleculeName: 50S ribosomal protein L15e / type: protein_or_peptide / ID: 15 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 20.179402 KDa
SequenceString:
SMYHYIEQTW QNKDWRRSIL RKRLIEWRRQ PAITRIDRPT RLNRARALGY KAKQGFVMVR VRVRRGGLNK PRPNSGRRPK RMGVYGYGP SKGYRWIAEE RAARKFPNLE VLGSYYVAED GMYKYYEVIM VDYSHPVIRS DPELKWLQDS VNRKRVFRGL T SAGQKSRG L

UniProtKB: Large ribosomal subunit protein eL15

+
Macromolecule #16: 50S ribosomal protein L18e

MacromoleculeName: 50S ribosomal protein L18e / type: protein_or_peptide / ID: 16 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 12.747252 KDa
SequenceString:
TNIMLRKLIT SLKKQDKAIW VRVAEELEAP RRKRAYINIY KINRYSKAND IIVVPGKVLG VGNLDHPVTV VALSFSKPAK EKILRSGGK VMSLYKAIQE LNDFKGKTVR LMK

UniProtKB: Large ribosomal subunit protein eL18

+
Macromolecule #17: 50S ribosomal protein L18

MacromoleculeName: 50S ribosomal protein L18 / type: protein_or_peptide / ID: 17 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 21.766139 KDa
SequenceString: TQGPNYRIKF RRRREGKTDY YTRYTYVINN AIRFVPRLTN KYVIVSVSKF DQKGDIMIAY AHSIELVKKY GWKGDTNNTP AAYLTGYLA GLRAVKSGVK AAVSDIGLFV PVKGGRIFAV IKGAIDAGLK VPVGDLGKLK DRVNGSHISA YAQKLKNENQ E LYNKLFSS ...String:
TQGPNYRIKF RRRREGKTDY YTRYTYVINN AIRFVPRLTN KYVIVSVSKF DQKGDIMIAY AHSIELVKKY GWKGDTNNTP AAYLTGYLA GLRAVKSGVK AAVSDIGLFV PVKGGRIFAV IKGAIDAGLK VPVGDLGKLK DRVNGSHISA YAQKLKNENQ E LYNKLFSS YIQRGLDPVL LPQHFEEVLN KIKEN

UniProtKB: Large ribosomal subunit protein uL18

+
Macromolecule #18: 50S ribosomal protein L19e

MacromoleculeName: 50S ribosomal protein L19e / type: protein_or_peptide / ID: 18 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 17.108916 KDa
SequenceString:
PEFQLQRRLA ADIAGVGLNN IKFNPERLEE VEEALTREDI KKLIKERAVI VNPKRGISSG RLKERKHKRR SKGEGRKHGS RKGKSGART GDKEIWINKI RKIRRYIRWL RDNNVIDKHT YRLLYKRAKG NYFKNLSDVK SYLRQ

UniProtKB: Large ribosomal subunit protein eL19

+
Macromolecule #19: 50S ribosomal protein L22

MacromoleculeName: 50S ribosomal protein L22 / type: protein_or_peptide / ID: 19 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 17.360293 KDa
SequenceString:
YPILSIPEDK LAKAVIKNID ASVRDLYNVC KAIRGMNLKE AREFLNNVLE EKEALPFWRY SHGTSHRSNI SRKWKVKSGR YPKKAIKYV LKLLDNAENN ANSKGLDIDN LKIVHIAAHK GLVLKRYMTR AFGRSTRKYK YLSHIEVILG E

UniProtKB: Large ribosomal subunit protein uL22

+
Macromolecule #20: 50S ribosomal protein L23

MacromoleculeName: 50S ribosomal protein L23 / type: protein_or_peptide / ID: 20 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 9.261987 KDa
SequenceString:
IIKEFLATEK AVKLIESQNT LTIIVNRNTT KKDIKNEVEK LFSVKVEKIN TLITPKGEKK AYVKLKQEYK ASDVAHKLGM L

UniProtKB: Large ribosomal subunit protein uL23

+
Macromolecule #21: 50S ribosomal protein L24e

MacromoleculeName: 50S ribosomal protein L24e / type: protein_or_peptide / ID: 21 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 6.338608 KDa
SequenceString:
RQCSFCGKDI LPGTGLMYVR NDGSLLWFCS SKCRKSMLKL HRDPKKLKWT KSYL

UniProtKB: Large ribosomal subunit protein eL24

+
Macromolecule #22: 50S ribosomal protein L24

MacromoleculeName: 50S ribosomal protein L24 / type: protein_or_peptide / ID: 22 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 14.130666 KDa
SequenceString:
MISSKPSKQR KLVYNLPNHL RYKLLTARLS EDLEKQYGIK RISIRKGDSV KLMRGSQVGY EGKVVEVDRK RGRVAIEGLT KKKADGTPV YVWVHASKVI ITKLDTGDKE RMDAIERKRK MRE

UniProtKB: Large ribosomal subunit protein uL24

+
Macromolecule #23: 50S ribosomal protein L29

MacromoleculeName: 50S ribosomal protein L29 / type: protein_or_peptide / ID: 23 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 7.37879 KDa
SequenceString:
PLEVDELRKM DLKQLKERLN ELEMQLLKLR VESRMGTLKN TASIKNTRKD IARILTVIGE KSK

UniProtKB: Large ribosomal subunit protein uL29

+
Macromolecule #24: 50S ribosomal protein L30e

MacromoleculeName: 50S ribosomal protein L30e / type: protein_or_peptide / ID: 24 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 10.391282 KDa
SequenceString:
FEGELKTLLR SGKVILGTRK TLKLLKTGKV KGVVVSSTLR QDLKDDIMTF SKFSDIPIYL YKGSGYELGT LCGKPFMVSV IGIVDEGES KILEF

UniProtKB: Large ribosomal subunit protein eL30

+
Macromolecule #25: 50S ribosomal protein L30

MacromoleculeName: 50S ribosomal protein L30 / type: protein_or_peptide / ID: 25 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 17.819736 KDa
SequenceString:
MNELIGVIRI RGWAATPWYI QDTLSMLRLK NAFNAMIYPK DSSIQGMLNL VSSYVTWGEL NDEGLRLLVS KLEISRGKKV NEEYVKDKL NVDFQSFVES IKDGKLRLNK LDEIFSLPIR LHPPKGGFKG KVSRPFRAGG EFGYRGDKIN ELIRRM

UniProtKB: Large ribosomal subunit protein uL30

+
Macromolecule #26: 50S ribosomal protein L31e

MacromoleculeName: 50S ribosomal protein L31e / type: protein_or_peptide / ID: 26 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 8.935899 KDa
SequenceString:
KPEKENFEMV INFRRVIMGR KTTRTKRAIK YVRYMVKRHF GAEKVIIDPL LAKAITMNGR DKIVRRVRIA VKRIG

UniProtKB: Large ribosomal subunit protein eL31

+
Macromolecule #27: 50S ribosomal protein L32e

MacromoleculeName: 50S ribosomal protein L32e / type: protein_or_peptide / ID: 27 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 14.328114 KDa
SequenceString:
KPAKKNMKSP GKAIKFLRFD WDKYYRIGRQ ERWRKPRGID NAIRLELKGY QPKVKIGYRT DKQIRGLHPS GLRPILVKSV KDLEAFAKG KQDVIIIISS TIGLRKRIEL IKKAEELGLK IANR

UniProtKB: Large ribosomal subunit protein eL32

+
Macromolecule #28: 50S ribosomal protein L34e

MacromoleculeName: 50S ribosomal protein L34e / type: protein_or_peptide / ID: 28 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 8.993502 KDa
SequenceString:
SPQQRSGSFR KVFVKLPSGK STIHYERRKD NIARCGMCKK PLNGVKNNYT YKYSKTEKRP ERVYGGYLCH KCLESLI

UniProtKB: Large ribosomal subunit protein eL34

+
Macromolecule #29: 50S ribosomal protein L37Ae

MacromoleculeName: 50S ribosomal protein L37Ae / type: protein_or_peptide / ID: 29 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 7.536857 KDa
SequenceString:
TGIAGRFGAR YGSSTRKKWK EVMERRYMPH QCPYCKTTGK VVRIASGIWY CRKCETKWAG LAYTP

UniProtKB: Large ribosomal subunit protein eL43

+
Macromolecule #30: 50S ribosomal protein L37e

MacromoleculeName: 50S ribosomal protein L37e / type: protein_or_peptide / ID: 30 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 6.274416 KDa
SequenceString:
MKGTPSFGKM NKTPTHVRCR RCGRNSFNAR KGYCAACGFG RSKKIRRYSW QNKK

UniProtKB: Large ribosomal subunit protein eL37

+
Macromolecule #31: 50S ribosomal protein L39e

MacromoleculeName: 50S ribosomal protein L39e / type: protein_or_peptide / ID: 31 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 5.861087 KDa
SequenceString:
KHKSLGKKLR LGKALKRNSP IPAWVIIKTQ AEIRFNPLRR NWRRNNLKV

UniProtKB: Large ribosomal subunit protein eL39

+
Macromolecule #32: 50S ribosomal protein L40E

MacromoleculeName: 50S ribosomal protein L40E / type: protein_or_peptide / ID: 32 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 6.336725 KDa
SequenceString:
MPLTDPVKLQ IVQQRVFLKK ICRDCGALNS IRATKCRRCH SSNLRAKKKE LPAKK

UniProtKB: 50S ribosomal protein L40e

+
Macromolecule #33: 50S ribosomal protein L44e

MacromoleculeName: 50S ribosomal protein L44e / type: protein_or_peptide / ID: 33 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 10.805958 KDa
SequenceString:
MKVPKVIKTY CPKCKTHTEH SVSLYKGGKR RSLAEGQRRY ERKNVGYGSK RKPEQKRFAK TTKKQTLVLK CQKCSYTIVK EGMRLKKLE LVE

UniProtKB: Large ribosomal subunit protein eL42

+
Macromolecule #34: 50S ribosomal protein L7Ae

MacromoleculeName: 50S ribosomal protein L7Ae / type: protein_or_peptide / ID: 34 / Number of copies: 3 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 13.351481 KDa
SequenceString:
PSYVKFEVPQ ELADKVLEAV KKAKDSGKIK KGTNETTKAV ERSQAKLVVI AEDVQPEEIV AHLPLLCEEK KIPYVYVPSK KSLGEACGL QVAAASVALM DPGEAKDLVD EIVKRVNEIK GKSS

UniProtKB: Large ribosomal subunit protein eL8

+
Macromolecule #35: 50S ribosomal protein L15

MacromoleculeName: 50S ribosomal protein L15 / type: protein_or_peptide / ID: 35 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 16.476072 KDa
SequenceString:
MVVRKEKKSR KYRGYRTHGW GTKGQHRDRG AQGGRQIGMH KEKWSWTVKF GEGWYGKHGF RNPTSKLVNA IGLRKLQEYI DNDKIKIEE ENGKKVVDLA KYGYDKLLGG GNLRLPLVIK VAKATEKAKE RVKEIGGEII LTSSE

UniProtKB: Large ribosomal subunit protein uL15

+
Macromolecule #36: 50S ribosomal protein L21e

MacromoleculeName: 50S ribosomal protein L21e / type: protein_or_peptide / ID: 36 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 11.15529 KDa
SequenceString:
VARSKGYRSK TRKLLEKKVR EKGAIPKLSL LMHDYSQGEY VVVKINPSIH KGMPHRRYHG KVGLVVGKRG KAYEVKVNIG DKERVLIVR PEHLIPFN

UniProtKB: Large ribosomal subunit protein eL21

+
Macromolecule #37: DUF2280 domain-containing protein

MacromoleculeName: DUF2280 domain-containing protein / type: protein_or_peptide / ID: 37 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 11.662535 KDa
SequenceString:
MKVVKYVLTA KIDYDGKEIE IKRSFRHRKN IFEFLKNADS NLKGALSEYA KQNKVKSSDL PLNEFITCGE IEEEQGVMRT ECKGKEKVS VKIEVQTQKI AK

UniProtKB: Uncharacterized protein

+
Macromolecule #38: Conserved protein

MacromoleculeName: Conserved protein / type: protein_or_peptide / ID: 38 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 8.320918 KDa
SequenceString:
MLKHQKYVYV DIGDQKKFLK VRFLKSRSEN NNPEAYVILD KISIKLPRNA KVIKYEDLPA EVKDKLKLKL

UniProtKB: Conserved protein

+
Macromolecule #39: 50S ribosomal protein L47A

MacromoleculeName: 50S ribosomal protein L47A / type: protein_or_peptide / ID: 39 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 9.276666 KDa
SequenceString:
MKISNVESKY SMKVRGQELL IEEARNEKGE KIIIFQSLTS AKLLNNEEWK ENTTDAKNVE KREDLPQDVR KITGKILSLI

UniProtKB: Uncharacterized protein

+
Macromolecule #40: 50S ribosomal protein L1

MacromoleculeName: 50S ribosomal protein L1 / type: protein_or_peptide / ID: 40 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 24.416643 KDa
SequenceString: LADKESLIEA LKLALSTEYN VKRNFTQSVE IILTFKGIDM KKGDLKLREI VPLPKQPSKA KRVLVVPSFE QLEYAKKASP NVVITREEL QKLQGQKRPV KKLARQNEWF LINQESMALA GRILGPALGP RGKFPTPLPN TADISEYINR FKRSVLVKTK D QPQVQVFI ...String:
LADKESLIEA LKLALSTEYN VKRNFTQSVE IILTFKGIDM KKGDLKLREI VPLPKQPSKA KRVLVVPSFE QLEYAKKASP NVVITREEL QKLQGQKRPV KKLARQNEWF LINQESMALA GRILGPALGP RGKFPTPLPN TADISEYINR FKRSVLVKTK D QPQVQVFI GTEDMKPEDL AENAIAVLNA IENKAKVETN LRNIYVKTTM GKAVKVKR

UniProtKB: Large ribosomal subunit protein uL1

+
Macromolecule #41: 30S ribosomal protein S3

MacromoleculeName: 30S ribosomal protein S3 / type: protein_or_peptide / ID: 41 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 22.396506 KDa
SequenceString: VLIKRHFLQK AAIKVMVDEY LAKQFYNAEY AGVEIVKTPI GTRVIIYAGR PPLIIGKGGK TIKQLAQVLE KFFGLENPQI TVTAAENPE LNARVMAFRL AIALEKGYHF RRAAFITIRR IMSSGAVGAE VIVSGKLTSE RAKYEKLKEG TVYKSGQQLE K IIDRAIGI ...String:
VLIKRHFLQK AAIKVMVDEY LAKQFYNAEY AGVEIVKTPI GTRVIIYAGR PPLIIGKGGK TIKQLAQVLE KFFGLENPQI TVTAAENPE LNARVMAFRL AIALEKGYHF RRAAFITIRR IMSSGAVGAE VIVSGKLTSE RAKYEKLKEG TVYKSGQQLE K IIDRAIGI AMLKPGVYGV EVVITKPTRS IDKIELKEKV EKT

UniProtKB: Small ribosomal subunit protein uS3

+
Macromolecule #42: 30S ribosomal protein S7

MacromoleculeName: 30S ribosomal protein S7 / type: protein_or_peptide / ID: 42 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 21.86232 KDa
SequenceString: ENIEVSNLNV KVFGKWDTKV EVRDPSLKKY IDLMSIYLPH TGGRHEHRRF GKSRIPIVER LINNLMRPGR NKGKKMLAYN IVKTTFDII AVKTGQNPIQ VLVRAIENAA PREEVTRIMY GGIVYYVAVD VAPQRRVDLA LRHLVTGASE ASFNNPKPIE E ALAEEIIA ...String:
ENIEVSNLNV KVFGKWDTKV EVRDPSLKKY IDLMSIYLPH TGGRHEHRRF GKSRIPIVER LINNLMRPGR NKGKKMLAYN IVKTTFDII AVKTGQNPIQ VLVRAIENAA PREEVTRIMY GGIVYYVAVD VAPQRRVDLA LRHLVTGASE ASFNNPKPIE E ALAEEIIA AANNDNKSVA IRKKEEIERI ALSSR

UniProtKB: Small ribosomal subunit protein uS7

+
Macromolecule #43: 30S ribosomal protein S10

MacromoleculeName: 30S ribosomal protein S10 / type: protein_or_peptide / ID: 43 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 11.775886 KDa
SequenceString:
TKARIRLWSS NIDSLNFVVN QIRNMAQKTG IQVSGPIPLP TTRMEVPVMR LPHGEGKKKW EHWEMKVHKR IIDIAADERV MRQLMRVRV PDDVYIEIEL I

UniProtKB: Small ribosomal subunit protein uS10

+
Macromolecule #44: 30S ribosomal protein S13

MacromoleculeName: 30S ribosomal protein S13 / type: protein_or_peptide / ID: 44 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 17.140783 KDa
SequenceString:
QQQFKYIVRL FGQDVDGTMK LPYALAMIKG IGYNTAMIII RKLNLDKDKR LGEISDEDIK KIENLLNNKI IPESPNWIYN RQKDYESGA DMHLVTSDLI FYVRNDIERE RRSRSWRGVR HSLGLKVRGQ RTRTTGRTGA TIGVRRAK

UniProtKB: Small ribosomal subunit protein uS13

+
Macromolecule #45: 30S ribosomal protein S14 type Z

MacromoleculeName: 30S ribosomal protein S14 type Z / type: protein_or_peptide / ID: 45 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 6.190371 KDa
SequenceString:
KYKPPAERRF GKGVQLCKRC GSRDSVIQKY GLYLCRQCFR EVAYPMGFRK TR

UniProtKB: Small ribosomal subunit protein uS14

+
Macromolecule #46: 30S ribosomal protein S17e

MacromoleculeName: 30S ribosomal protein S17e / type: protein_or_peptide / ID: 46 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 7.336366 KDa
SequenceString:
GNVYTKDIKR VARELYDKFK DQASDKYDDN KKLVDEYVNV SSKKVKNRIA GYLTRYVKIS KN

UniProtKB: Small ribosomal subunit protein eS17

+
Macromolecule #47: 30S ribosomal protein S19e

MacromoleculeName: 30S ribosomal protein S19e / type: protein_or_peptide / ID: 47 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 17.55966 KDa
SequenceString:
TVQMVPADIL IPKLAEYLKN NVKELNPPNW VYFAKTASFK ERVPDDIENW WYIRAASLLR HLYIYKEPIG LQKTRKLYSG SKRRGTKPP RSVKAPTHSI RTILQQLEKA GLVTKTRRGR ILSPKGRSLL DKLAYEMFKE LAEKKQDLKK Y

UniProtKB: Small ribosomal subunit protein eS19

+
Macromolecule #48: 30S ribosomal protein S19

MacromoleculeName: 30S ribosomal protein S19 / type: protein_or_peptide / ID: 48 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 13.800354 KDa
SequenceString:
WKKFRYRGKS LEDLLNMPMD EFIKLLPSRQ RRSLKRGFSD KQRRLLEKIR KISREGKQNK VIKTHVRNMV ILPEMVGLRF AVYNGKEFV EFQVVPEMIG RYLGEYSITT KKVEHG

UniProtKB: Small ribosomal subunit protein uS19

+
Macromolecule #49: 30S ribosomal protein S9

MacromoleculeName: 30S ribosomal protein S9 / type: protein_or_peptide / ID: 49 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 15.638136 KDa
SequenceString:
QAEQNFMITY ARRKSARASC YIKPGNGKVF VNDIPIEIIP IEVVRYKIME PLVLAGDKIT SSIEARIYTQ GGGIMGQADA ARMALARAL VKFTNSKELV EIYKSYDRTM LAGDPRQTES EKWMRYSARR WRQKAYR

UniProtKB: Small ribosomal subunit protein uS9

+
Macromolecule #50: 30S ribosomal protein S28e

MacromoleculeName: 30S ribosomal protein S28e / type: protein_or_peptide / ID: 50 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 7.094255 KDa
SequenceString:
GFPAEVIQIL DRTGVTGEVT QVRVRVLEGR DKGRILTRNV KGPVRLGDIL ILRETEREAR KLS

UniProtKB: Small ribosomal subunit protein eS28

+
Macromolecule #51: 30S ribosomal protein S27ae

MacromoleculeName: 30S ribosomal protein S27ae / type: protein_or_peptide / ID: 51 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 6.261392 KDa
SequenceString:
QSKAVVRTYY EVEQDSIKLK NKKCPRCGSI MAHHMKPLER WACGKCGYTE FIGK

UniProtKB: Small ribosomal subunit protein eS31

+
Macromolecule #52: 30S ribosomal protein S2

MacromoleculeName: 30S ribosomal protein S2 / type: protein_or_peptide / ID: 52 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 22.474012 KDa
SequenceString: ELLVPLDTYL SAGVHIGTHT CTRYMERFIY RVRPEGLYVL DVRKIDERLR VAAKFISRFR PEAVLTVASR PYAFTPVQKF SEVVRGKEI SGRFPPGTLT NPYLDNYIEP EVLIVTDPRT DLQAIKEASK VGIPIVAFTD TDARVDFIDV IIPANNKGRK S LALLYWVL ...String:
ELLVPLDTYL SAGVHIGTHT CTRYMERFIY RVRPEGLYVL DVRKIDERLR VAAKFISRFR PEAVLTVASR PYAFTPVQKF SEVVRGKEI SGRFPPGTLT NPYLDNYIEP EVLIVTDPRT DLQAIKEASK VGIPIVAFTD TDARVDFIDV IIPANNKGRK S LALLYWVL ARQILRERKE IPLDGDIPLR VEDFETRL

UniProtKB: Small ribosomal subunit protein uS2

+
Macromolecule #53: 30S ribosomal protein S4e

MacromoleculeName: 30S ribosomal protein S4e / type: protein_or_peptide / ID: 53 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 27.339988 KDa
SequenceString: VHITRFEAPW FLKVGKKEYK WIIRSRAGPH KIQESVPLAI LLKYYLKAVD TTREAKRIIF DGKVLVDGKV RRDYKYPVGL MDVVEIPSA DLRVRIIPDN VRYLTTINIS REDAKYKFVR IMNKTTLKSG VLQLNLEDGR NILLKGEELS QYNLPTLTTL K IELPEQKI ...String:
VHITRFEAPW FLKVGKKEYK WIIRSRAGPH KIQESVPLAI LLKYYLKAVD TTREAKRIIF DGKVLVDGKV RRDYKYPVGL MDVVEIPSA DLRVRIIPDN VRYLTTINIS REDAKYKFVR IMNKTTLKSG VLQLNLEDGR NILLKGEELS QYNLPTLTTL K IELPEQKI TTAYTIKEGV YAMIIGGRNA GLHGKISKIQ LAKYKRIKYS LVTLEGKDGS TFQTNLINVM AIGENEADSN LG

UniProtKB: Small ribosomal subunit protein eS4

+
Macromolecule #54: 30S ribosomal protein S4

MacromoleculeName: 30S ribosomal protein S4 / type: protein_or_peptide / ID: 54 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 19.440623 KDa
SequenceString:
DPRKSKKKWM GPSHPWIKIN LGKEQILIGK YGLRNKKEIW IAQTMIRNFR HQARSLLALP PAERNIREKQ LIQKLYRMGI LEKDNSTLD DILSLTEENY LERRLQTIVY KKGLARTIYQ ARQLITHGHI AISGRKVTSP GYVVLRGEED LIDYYPTSPF K QNPPSQ

UniProtKB: Small ribosomal subunit protein uS4

+
Macromolecule #55: 30S ribosomal protein S5

MacromoleculeName: 30S ribosomal protein S5 / type: protein_or_peptide / ID: 55 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 22.782686 KDa
SequenceString: EDWKPRTKVG QLIKEGKINS MKELFERNLP IVEPEIVDVL LPKLRYDIVD IGIVQKQTDA GELSRYKVLI VMGNMDGYIS YGTGKAKQL RVAIQKAIRD AKMRIIPVRR GCGSWECTCG ESHSLPFIVS GKAGSVEVTL LPAPKGTGLV VGSVLKTFLS L AGLKDVWS ...String:
EDWKPRTKVG QLIKEGKINS MKELFERNLP IVEPEIVDVL LPKLRYDIVD IGIVQKQTDA GELSRYKVLI VMGNMDGYIS YGTGKAKQL RVAIQKAIRD AKMRIIPVRR GCGSWECTCG ESHSLPFIVS GKAGSVEVTL LPAPKGTGLV VGSVLKTFLS L AGLKDVWS RTKGSTYTHE NFIKAAYIAL YNTYRFVTPV DWGRMK

UniProtKB: Small ribosomal subunit protein uS5

+
Macromolecule #56: 30S ribosomal protein S6e

MacromoleculeName: 30S ribosomal protein S6e / type: protein_or_peptide / ID: 56 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 11.479355 KDa
SequenceString:
ALAYRTRAFQ LSLDQSKLPN LVGTKIGDVI DINVSGVNLK LKITGGSDNS GFSMRFDVGG GAKRKILVSG PPGYYPKEDG LRRKRTVRG NMITPEIVQI NTIMIR

UniProtKB: Small ribosomal subunit protein eS6

+
Macromolecule #57: 30S ribosomal protein S8e

MacromoleculeName: 30S ribosomal protein S8e / type: protein_or_peptide / ID: 57 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 14.113179 KDa
SequenceString:
SYYQGNDSRK ITGGQKGKNR DKRKYELGSP PTETKISDKD IKEKDRVAGG NFKLRLRYAS YANVYDPQSK TAKKVKIISV LESPANREY ARRGIIVKGT LIQTELGKAK VTSRPGQDGI INALLLR

UniProtKB: Small ribosomal subunit protein eS8

+
Macromolecule #58: 30S ribosomal protein S8

MacromoleculeName: 30S ribosomal protein S8 / type: protein_or_peptide / ID: 58 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 14.624191 KDa
SequenceString:
INPLANALAT LYNNEMRRNK QALITPASKL IISVLRVMQK EGYIGEFEYI DDGRAGKIIV QLLGRINKCG PISPRYPLDY NGLLRLPDY IRKYLPSKEI GIIIISTPKG VMSHRDGIRE KIGGVTLGYV Y

UniProtKB: Small ribosomal subunit protein uS8

+
Macromolecule #59: 30S ribosomal protein S11

MacromoleculeName: 30S ribosomal protein S11 / type: protein_or_peptide / ID: 59 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 13.652649 KDa
SequenceString:
REIRWGNARI YASQNNTIIT ITDITGAEII SKASGGMVVK ADREKPSPYA AMLAANKAAN DAFDKGISAI HIKVRAQGGY GSKTPGPGA QPAIRALARA GFIIGRIEDV TPLPHDTIRR PGGRRGRRV

UniProtKB: Small ribosomal subunit protein uS11

+
Macromolecule #60: 30S ribosomal protein S12

MacromoleculeName: 30S ribosomal protein S12 / type: protein_or_peptide / ID: 60 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 15.703551 KDa
SequenceString:
GSKSPKGLFA ARKLRLKRLK FSWSQRSFKR RMLALKEKFD PLEGAPMARG IVLEKVGIES RQPNSAVRKA VRVQLVKNGR IVTAFVPGD GGVNFIDEHD EVVIAGIGGT LGRSMGDLPG VRYKVVMVNG VSLDALYKGK KQKP

UniProtKB: Small ribosomal subunit protein uS12

+
Macromolecule #61: 30S ribosomal protein S15

MacromoleculeName: 30S ribosomal protein S15 / type: protein_or_peptide / ID: 61 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 17.438426 KDa
SequenceString:
MNKKRAKGNS HSIRPVRSGP PKWVRFTREE VELLVEELAK RGYPPSMIGM VLRDQYGVPL VKQITGRKLT AILQDRNMKP KIPEDLFNL MRRAVNIRRH LFEYPKDKSA KRGLEEVESK IRRLASYYKE TGKLPQEWSY DPAKAELLVT

UniProtKB: Small ribosomal subunit protein uS15

+
Macromolecule #62: 30S ribosomal protein S17

MacromoleculeName: 30S ribosomal protein S17 / type: protein_or_peptide / ID: 62 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 12.602619 KDa
SequenceString:
KKGQLVKNVG IEGVSAPSKT CDDEYCPYHG SLKVRGIVLE GKLIRARANR TGTVEREYIF YDSKYKRYER RRSRIHVHIP SCLEVKEGD NVIIGESRPI AKSISFVILG VK

UniProtKB: Small ribosomal subunit protein uS17

+
Macromolecule #63: 30S ribosomal protein S24e

MacromoleculeName: 30S ribosomal protein S24e / type: protein_or_peptide / ID: 63 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 10.765213 KDa
SequenceString:
VSDKVEGIVE RDIQNNVANR RELYIKLFHI GSGTPSRKEL VKAIASTFST AEDLVVVKKV FTNYGSGISY ARVNVYKDKD SLQKLEPQY LIGRDTG

UniProtKB: Small ribosomal subunit protein eS24

+
Macromolecule #64: 30S ribosomal protein S27e

MacromoleculeName: 30S ribosomal protein S27e / type: protein_or_peptide / ID: 64 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 6.576969 KDa
SequenceString:
MKAKFKILIP EPKSKFIRVK CRQCNNEQVI FSNATFPVRC LSCGAQIVIP KGGKAKIEG

UniProtKB: Small ribosomal subunit protein eS27

+
Macromolecule #65: 30S ribosomal protein S3Ae

MacromoleculeName: 30S ribosomal protein S3Ae / type: protein_or_peptide / ID: 65 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 21.876621 KDa
SequenceString:
IRDKWKLKKW YVITAPKVFG EALLGSTPAY DINKALSRKI EVTLYDLTGD YNLVYIHLYF KILGNISGDK LSTIFYGHEL SRDYIRSLV RRKSSKINAV VDVTTKDGYM LRVKGLVLTT YRAHISQKTA IRKVISDITR KKAEESDFDQ FVQDVIFGKL S NDIFQEAK KIYPLRKVEI EKTKLLKAPK V

UniProtKB: Small ribosomal subunit protein eS1

+
Macromolecule #68: PHE-PHE-PHE-PHE-PHE-PHE

MacromoleculeName: PHE-PHE-PHE-PHE-PHE-PHE / type: protein_or_peptide / ID: 68 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Sulfolobus acidocaldarius DSM 639 (acidophilic)
Molecular weightTheoretical: 901.058 Da
SequenceString:
FFFFFF

+
Macromolecule #69: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER

MacromoleculeName: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER / type: ligand / ID: 69 / Number of copies: 1 / Formula: GNP
Molecular weightTheoretical: 522.196 Da
Chemical component information

ChemComp-GNP:
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER / GppNHp, GMPPNP, energy-carrying molecule analogue*YM / 5'-Guanylyl imidodiphosphate

+
Macromolecule #70: UNKNOWN

MacromoleculeName: UNKNOWN / type: ligand / ID: 70 / Number of copies: 57 / Formula: UNK
Molecular weightTheoretical: 103.12 Da
Chemical component information

ChemComp-UNK:
UNKNOWN

-
Experimental details

-
Structure determination

Methodcryo EM
Processingsingle particle reconstruction
Aggregation state2D array

-
Sample preparation

Concentration5 mg/mL
BufferpH: 7.5
VitrificationCryogen name: ETHANE

-
Electron microscopy

MicroscopeFEI TITAN KRIOS
Electron beamAcceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN
Electron opticsIllumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELDBright-field microscopy / Nominal defocus max: 3.0 µm / Nominal defocus min: 1.0 µm
Image recordingFilm or detector model: GATAN K2 SUMMIT (4k x 4k) / Detector mode: SUPER-RESOLUTION / Average electron dose: 26.7 e/Å2
Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company

-
Image processing

Startup modelType of model: PDB ENTRY
PDB model - PDB ID:

4v51

Initial angle assignmentType: NOT APPLICABLE
Final angle assignmentType: NOT APPLICABLE
Final reconstructionResolution.type: BY AUTHOR / Resolution: 4.1 Å / Resolution method: FSC 0.143 CUT-OFF / Number images used: 3095

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi

Thousand views of thousand structures

  • Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
  • This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
  • The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

Read more