+Open data
-Basic information
Entry | Database: EMDB / ID: EMD-31517 | |||||||||
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Title | Cryo-EM structure of EBV-gB in complex with nAb 3A5 | |||||||||
Map data | ||||||||||
Sample |
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Biological species | Oryctolagus cuniculus (rabbit) / Human gammaherpesvirus 4 (Epstein-Barr virus) | |||||||||
Method | single particle reconstruction / cryo EM / Resolution: 9.0 Å | |||||||||
Authors | Zheng Q / Li S / Zha Z / Chen Y / Hong J / Zhang X | |||||||||
Citation | Journal: To Be Published Title: Cryo-EM structure of EBV gB in complex with nAbs 3A3 and 3A5 Authors: Zheng Q / Li S / Zha Z / Hong J / Chen Y / Zhang X | |||||||||
History |
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-Structure visualization
Supplemental images |
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-Downloads & links
-EMDB archive
Map data | emd_31517.map.gz | 95.3 MB | EMDB map data format | |
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Header (meta data) | emd-31517-v30.xml emd-31517.xml | 8.1 KB 8.1 KB | Display Display | EMDB header |
Images | emd_31517.png | 30.6 KB | ||
Archive directory | http://ftp.pdbj.org/pub/emdb/structures/EMD-31517 ftp://ftp.pdbj.org/pub/emdb/structures/EMD-31517 | HTTPS FTP |
-Related structure data
-Links
EMDB pages | EMDB (EBI/PDBe) / EMDataResource |
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-Map
File | Download / File: emd_31517.map.gz / Format: CCP4 / Size: 103 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||
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Voxel size | X=Y=Z: 1.12 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Sample components
-Entire : Cryo-EM structure of EBV gB in complex with nAbs 3A3 and 3A5
Entire | Name: Cryo-EM structure of EBV gB in complex with nAbs 3A3 and 3A5 |
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Components |
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-Supramolecule #1: Cryo-EM structure of EBV gB in complex with nAbs 3A3 and 3A5
Supramolecule | Name: Cryo-EM structure of EBV gB in complex with nAbs 3A3 and 3A5 type: complex / ID: 1 / Parent: 0 / Macromolecule list: all |
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Source (natural) | Organism: Oryctolagus cuniculus (rabbit) |
Recombinant expression | Organism: Homo sapiens (human) |
-Macromolecule #1: EBV gB
Macromolecule | Name: EBV gB / type: protein_or_peptide / ID: 1 / Enantiomer: DEXTRO |
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Source (natural) | Organism: Human gammaherpesvirus 4 (Epstein-Barr virus) |
Sequence | String: AQTPEQPAPP ATTVQPTATR QQTSFPFRVC ELSSHGDLFR FSSDIQCPSF GTRENHTEGL LMVFKDNIIP YSFKVRSYTK IVTNILIYNG HRADSVTNRH EEKFSVESYE TDQMDTIYQC YNAVKMTKDG LTRVYVDRDG VNITVNLKPT GGLANGVRRY ASQTELYDAP ...String: AQTPEQPAPP ATTVQPTATR QQTSFPFRVC ELSSHGDLFR FSSDIQCPSF GTRENHTEGL LMVFKDNIIP YSFKVRSYTK IVTNILIYNG HRADSVTNRH EEKFSVESYE TDQMDTIYQC YNAVKMTKDG LTRVYVDRDG VNITVNLKPT GGLANGVRRY ASQTELYDAP GRVEATYRTR TTVNCLITDM MAKSNSPFDF FVTTTGQTVE MSPFYDGKNT ETFHERADSF HVRTNYKIVD YDNRGTNPQG ERRAFLDKGT YTLSWKLENR TAYCPLQHWQ TFDSTIATET GKSIHFVTDE GTSSFVTNTT VGIELPDAFK CIEEQVNKTM HEKYEAVQDR YTKGQEAITY FITSGGLLLA WLPLTPRSLA TVKNLTELTT PTSSPPSSPS PPAPPAARGS TSAAVLRRRR RNAGNATTPV PPAAPGKSLG TLNNPATVQI QFAYDSLRRQ INRMLGDLAR AWCLEQKRQN MVLRELTKIN PTTVMSSIYG KAVAAKRLGD VISVSQCVPV NQATVTLRKS MRVPGSETMC YSRPLVSFSF INDTKTYEGQ LGTDNEIFLT KKMTEVCQAT SQYYFQSGNE IHVYNDYHHF KTIELDGIAT LQTFISLNTS LIENIDFASL ELYSRDEQRA SNVFDLEGIF REYNFQAQNI A |
-Experimental details
-Structure determination
Method | cryo EM |
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Processing | single particle reconstruction |
Aggregation state | particle |
-Sample preparation
Buffer | pH: 7.4 |
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Vitrification | Cryogen name: ETHANE |
-Electron microscopy
Microscope | FEI TECNAI F30 |
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Image recording | Film or detector model: FEI FALCON III (4k x 4k) / Average electron dose: 60.0 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD |
Experimental equipment | Model: Tecnai F30 / Image courtesy: FEI Company |
-Image processing
Final reconstruction | Resolution.type: BY AUTHOR / Resolution: 9.0 Å / Resolution method: FSC 0.143 CUT-OFF / Number images used: 18826 |
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Initial angle assignment | Type: RANDOM ASSIGNMENT |
Final angle assignment | Type: MAXIMUM LIKELIHOOD |