+データを開く
-基本情報
登録情報 | データベース: EMDB / ID: EMD-27663 | ||||||||||||
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タイトル | Open state of RFC:PCNA bound to a 3' ss/dsDNA junction | ||||||||||||
マップデータ | Open RFC-PCNA | ||||||||||||
試料 |
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キーワード | REPLICATION-DNA complex | ||||||||||||
機能・相同性 | 機能・相同性情報 DNA clamp unloader activity / DNA clamp unloading / Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha) / Gap-filling DNA repair synthesis and ligation in GG-NER / meiotic mismatch repair / Processive synthesis on the lagging strand / Removal of the Flap Intermediate / Ctf18 RFC-like complex / Rad17 RFC-like complex / DNA replication factor C complex ...DNA clamp unloader activity / DNA clamp unloading / Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha) / Gap-filling DNA repair synthesis and ligation in GG-NER / meiotic mismatch repair / Processive synthesis on the lagging strand / Removal of the Flap Intermediate / Ctf18 RFC-like complex / Rad17 RFC-like complex / DNA replication factor C complex / Elg1 RFC-like complex / E3 ubiquitin ligases ubiquitinate target proteins / Polymerase switching / SUMOylation of DNA replication proteins / positive regulation of DNA metabolic process / maintenance of DNA trinucleotide repeats / DNA clamp loader activity / Translesion Synthesis by POLH / Translesion synthesis by REV1 / Translesion synthesis by POLK / Translesion synthesis by POLI / establishment of mitotic sister chromatid cohesion / DNA replication checkpoint signaling / PCNA complex / Activation of ATR in response to replication stress / Termination of translesion DNA synthesis / lagging strand elongation / postreplication repair / sister chromatid cohesion / silent mating-type cassette heterochromatin formation / mitotic sister chromatid cohesion / error-free translesion synthesis / DNA polymerase processivity factor activity / leading strand elongation / Gap-filling DNA repair synthesis and ligation in TC-NER / Dual incision in TC-NER / subtelomeric heterochromatin formation / mismatch repair / translesion synthesis / positive regulation of DNA repair / replication fork / positive regulation of DNA replication / DNA damage checkpoint signaling / nucleotide-excision repair / DNA-templated DNA replication / mitotic cell cycle / chromosome, telomeric region / cell division / DNA repair / ATP hydrolysis activity / DNA binding / ATP binding / identical protein binding / nucleus / cytosol 類似検索 - 分子機能 | ||||||||||||
生物種 | Saccharomyces cerevisiae (パン酵母) | ||||||||||||
手法 | 単粒子再構成法 / クライオ電子顕微鏡法 / 解像度: 2.1 Å | ||||||||||||
データ登録者 | Schrecker M / Hite RK | ||||||||||||
資金援助 | 米国, 3件
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引用 | ジャーナル: Elife / 年: 2022 タイトル: Multistep loading of a DNA sliding clamp onto DNA by replication factor C. 著者: Marina Schrecker / Juan C Castaneda / Sujan Devbhandari / Charanya Kumar / Dirk Remus / Richard K Hite / 要旨: The DNA sliding clamp proliferating cell nuclear antigen (PCNA) is an essential co-factor for many eukaryotic DNA metabolic enzymes. PCNA is loaded around DNA by the ATP-dependent clamp loader ...The DNA sliding clamp proliferating cell nuclear antigen (PCNA) is an essential co-factor for many eukaryotic DNA metabolic enzymes. PCNA is loaded around DNA by the ATP-dependent clamp loader replication factor C (RFC), which acts at single-stranded (ss)/double-stranded DNA (dsDNA) junctions harboring a recessed 3' end (3' ss/dsDNA junctions) and at DNA nicks. To illuminate the loading mechanism we have investigated the structure of RFC:PCNA bound to ATPγS and 3' ss/dsDNA junctions or nicked DNA using cryogenic electron microscopy. Unexpectedly, we observe open and closed PCNA conformations in the RFC:PCNA:DNA complex, revealing that PCNA can adopt an open, planar conformation that allows direct insertion of dsDNA, and raising the question of whether PCNA ring closure is mechanistically coupled to ATP hydrolysis. By resolving multiple DNA-bound states of RFC:PCNA we observe that partial melting facilitates lateral insertion into the central channel formed by RFC:PCNA. We also resolve the Rfc1 N-terminal domain and demonstrate that its single BRCT domain participates in coordinating DNA prior to insertion into the central RFC channel, which promotes PCNA loading on the lagging strand of replication forks in vitro. Combined, our data suggest a comprehensive and fundamentally revised model for the RFC-catalyzed loading of PCNA onto DNA. | ||||||||||||
履歴 |
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-構造の表示
添付画像 |
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-ダウンロードとリンク
-EMDBアーカイブ
マップデータ | emd_27663.map.gz | 109 MB | EMDBマップデータ形式 | |
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ヘッダ (付随情報) | emd-27663-v30.xml emd-27663.xml | 31 KB 31 KB | 表示 表示 | EMDBヘッダ |
FSC (解像度算出) | emd_27663_fsc.xml | 12.6 KB | 表示 | FSCデータファイル |
画像 | emd_27663.png | 180.3 KB | ||
Filedesc metadata | emd-27663.cif.gz | 8.2 KB | ||
その他 | emd_27663_additional_1.map.gz emd_27663_half_map_1.map.gz emd_27663_half_map_2.map.gz | 677 MB 200.2 MB 200.2 MB | ||
アーカイブディレクトリ | http://ftp.pdbj.org/pub/emdb/structures/EMD-27663 ftp://ftp.pdbj.org/pub/emdb/structures/EMD-27663 | HTTPS FTP |
-検証レポート
文書・要旨 | emd_27663_validation.pdf.gz | 845.6 KB | 表示 | EMDB検証レポート |
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文書・詳細版 | emd_27663_full_validation.pdf.gz | 845.2 KB | 表示 | |
XML形式データ | emd_27663_validation.xml.gz | 21.6 KB | 表示 | |
CIF形式データ | emd_27663_validation.cif.gz | 28 KB | 表示 | |
アーカイブディレクトリ | https://ftp.pdbj.org/pub/emdb/validation_reports/EMD-27663 ftp://ftp.pdbj.org/pub/emdb/validation_reports/EMD-27663 | HTTPS FTP |
-関連構造データ
関連構造データ | 8dqxMC 8dqwC 8dqzC 8dr0C 8dr1C 8dr3C 8dr4C 8dr5C 8dr6C 8dr7C C: 同じ文献を引用 (文献) M: このマップから作成された原子モデル |
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類似構造データ | 類似検索 - 機能・相同性F&H 検索 |
-リンク
EMDBのページ | EMDB (EBI/PDBe) / EMDataResource |
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「今月の分子」の関連する項目 |
-マップ
ファイル | ダウンロード / ファイル: emd_27663.map.gz / 形式: CCP4 / 大きさ: 216 MB / タイプ: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||
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注釈 | Open RFC-PCNA | ||||||||||||||||||||
ボクセルのサイズ | X=Y=Z: 0.826 Å | ||||||||||||||||||||
密度 |
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対称性 | 空間群: 1 | ||||||||||||||||||||
詳細 | EMDB XML:
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-添付データ
-追加マップ: Density modified and 1.5x resampled
ファイル | emd_27663_additional_1.map | ||||||||||||
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注釈 | Density modified and 1.5x resampled | ||||||||||||
投影像・断面図 |
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密度ヒストグラム |
-ハーフマップ: A
ファイル | emd_27663_half_map_1.map | ||||||||||||
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注釈 | A | ||||||||||||
投影像・断面図 |
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密度ヒストグラム |
-ハーフマップ: B
ファイル | emd_27663_half_map_2.map | ||||||||||||
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注釈 | B | ||||||||||||
投影像・断面図 |
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密度ヒストグラム |