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- EMDB-26907: Rat Kidney V1 Complex without H with SidK and NCOA7B, State 1, Su... -
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Open data
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Basic information
Entry | ![]() | |||||||||
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Title | Rat Kidney V1 Complex without H with SidK and NCOA7B, State 1, Subunit EGABC and NCOA7B focused refinement | |||||||||
![]() | V1 Complex without H with SidK and NCOA7B, State 1, Subunit EGABC and NCOA7B focused refinement | |||||||||
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![]() | V-ATPase / Complex / Membrane protein / PROTON TRANSPORT | |||||||||
Biological species | ![]() ![]() | |||||||||
Method | single particle reconstruction / cryo EM / Resolution: 2.8 Å | |||||||||
![]() | Abbas YM / Rubinstein JL | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Structure of V-ATPase with NCOA7B Authors: Abbas YM / Rubinstein JL | |||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 1.3 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 11.3 KB 11.3 KB | Display Display | ![]() |
Images | ![]() | 51.2 KB | ||
Filedesc metadata | ![]() | 3.5 KB | ||
Others | ![]() ![]() | 151.9 MB 151.9 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
EMDB pages | ![]() ![]() |
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Map
File | ![]() | ||||||||||||||||||||
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Annotation | V1 Complex without H with SidK and NCOA7B, State 1, Subunit EGABC and NCOA7B focused refinement | ||||||||||||||||||||
Voxel size | X=Y=Z: 1.06 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Half map: V1 Complex without H with SidK and NCOA7B,...
File | emd_26907_half_map_1.map | ||||||||||||
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Annotation | V1 Complex without H with SidK and NCOA7B, State 1, Subunit EGABC and NCOA7B focused refinement | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: V1 Complex without H with SidK and NCOA7B,...
File | emd_26907_half_map_2.map | ||||||||||||
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Annotation | V1 Complex without H with SidK and NCOA7B, State 1, Subunit EGABC and NCOA7B focused refinement | ||||||||||||
Projections & Slices |
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Density Histograms |
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Sample components
-Entire : Rat Kidney V1 with SidK and NCOA7B
Entire | Name: Rat Kidney V1 with SidK and NCOA7B |
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Components |
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-Supramolecule #1: Rat Kidney V1 with SidK and NCOA7B
Supramolecule | Name: Rat Kidney V1 with SidK and NCOA7B / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1 |
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Source (natural) | Organism: ![]() ![]() |
-Experimental details
-Structure determination
Method | cryo EM |
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![]() | single particle reconstruction |
Aggregation state | particle |
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Sample preparation
Buffer | pH: 7 |
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Vitrification | Cryogen name: ETHANE |
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Electron microscopy
Microscope | FEI TITAN KRIOS |
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Image recording | Film or detector model: FEI FALCON IV (4k x 4k) / Average electron dose: 40.826 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 3.8000000000000003 µm / Nominal defocus min: 0.3 µm |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |
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Image processing
Startup model | Type of model: INSILICO MODEL |
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Final reconstruction | Resolution.type: BY AUTHOR / Resolution: 2.8 Å / Resolution method: FSC 0.143 CUT-OFF / Number images used: 175138 |
Initial angle assignment | Type: PROJECTION MATCHING |
Final angle assignment | Type: PROJECTION MATCHING |