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Yorodumi- EMDB-23750: Human Cholecystokinin 1 receptor (CCK1R) Gq chimera (mGsqi) complex -
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Open data
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Basic information
| Entry | Database: EMDB / ID: EMD-23750 | ||||||||||||
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| Title | Human Cholecystokinin 1 receptor (CCK1R) Gq chimera (mGsqi) complex | ||||||||||||
Map data | consensus map | ||||||||||||
Sample |
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Keywords | GPCR / MEMBRANE PROTEIN / MEMBRANE PROTEIN-SIGNALING PROTEIN complex | ||||||||||||
| Function / homology | Function and homology informationcholecystokinin receptor activity / cholecystokinin signaling pathway / regulation of hormone secretion / neuropeptide hormone activity / G-protein activation / Activation of the phototransduction cascade / Glucagon-type ligand receptors / Thromboxane signalling through TP receptor / Sensory perception of sweet, bitter, and umami (glutamate) taste / G beta:gamma signalling through PI3Kgamma ...cholecystokinin receptor activity / cholecystokinin signaling pathway / regulation of hormone secretion / neuropeptide hormone activity / G-protein activation / Activation of the phototransduction cascade / Glucagon-type ligand receptors / Thromboxane signalling through TP receptor / Sensory perception of sweet, bitter, and umami (glutamate) taste / G beta:gamma signalling through PI3Kgamma / G beta:gamma signalling through CDC42 / Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding / Activation of G protein gated Potassium channels / Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits / Ca2+ pathway / G alpha (z) signalling events / High laminar flow shear stress activates signaling by PIEZO1 and PECAM1:CDH5:KDR in endothelial cells / Glucagon-like Peptide-1 (GLP1) regulates insulin secretion / Vasopressin regulates renal water homeostasis via Aquaporins / Adrenaline,noradrenaline inhibits insulin secretion / ADP signalling through P2Y purinoceptor 12 / G alpha (q) signalling events / G alpha (i) signalling events / Thrombin signalling through proteinase activated receptors (PARs) / eating behavior / photoreceptor outer segment membrane / spectrin binding / peptide hormone receptor binding / forebrain development / alkylglycerophosphoethanolamine phosphodiesterase activity / peptide hormone binding / PKA activation in glucagon signalling / developmental growth / hair follicle placode formation / photoreceptor outer segment / D1 dopamine receptor binding / intracellular transport / vascular endothelial cell response to laminar fluid shear stress / renal water homeostasis / activation of adenylate cyclase activity / adenylate cyclase inhibitor activity / cellular response to hormone stimulus / Hedgehog 'off' state / positive regulation of protein localization to cell cortex / digestion / T cell migration / Adenylate cyclase inhibitory pathway / adenylate cyclase-activating adrenergic receptor signaling pathway / D2 dopamine receptor binding / response to prostaglandin E / adenylate cyclase regulator activity / G protein-coupled serotonin receptor binding / adenylate cyclase-inhibiting serotonin receptor signaling pathway / cardiac muscle cell apoptotic process / photoreceptor inner segment / cellular response to glucagon stimulus / regulation of insulin secretion / cellular response to forskolin / axonogenesis / regulation of mitotic spindle organization / Peptide ligand-binding receptors / adenylate cyclase activator activity / trans-Golgi network membrane / Regulation of insulin secretion / negative regulation of inflammatory response to antigenic stimulus / positive regulation of cholesterol biosynthetic process / negative regulation of insulin secretion / G protein-coupled receptor binding / response to peptide hormone / hormone activity / bone development / adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway / adenylate cyclase-modulating G protein-coupled receptor signaling pathway / platelet aggregation / G-protein beta/gamma-subunit complex binding / centriolar satellite / cognition / adenylate cyclase-activating G protein-coupled receptor signaling pathway / G beta:gamma signalling through PLC beta / Presynaptic function of Kainate receptors / Thromboxane signalling through TP receptor / neuron migration / Activation of G protein gated Potassium channels / Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits / G-protein activation / Prostacyclin signalling through prostacyclin receptor / G beta:gamma signalling through CDC42 / Glucagon signaling in metabolic regulation / G beta:gamma signalling through BTK / ADP signalling through P2Y purinoceptor 12 / Glucagon-type ligand receptors / Adrenaline,noradrenaline inhibits insulin secretion / Vasopressin regulates renal water homeostasis via Aquaporins / GDP binding / Glucagon-like Peptide-1 (GLP1) regulates insulin secretion / G alpha (z) signalling events / sensory perception of smell / cellular response to catecholamine stimulus / ADP signalling through P2Y purinoceptor 1 / ADORA2B mediated anti-inflammatory cytokines production Similarity search - Function | ||||||||||||
| Biological species | ![]() Homo sapiens (human) / ![]() | ||||||||||||
| Method | single particle reconstruction / cryo EM / Resolution: 2.44 Å | ||||||||||||
Authors | Mobbs JI / Belousoff MJ | ||||||||||||
| Funding support | Australia, Japan, 3 items
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Citation | Journal: PLoS Biol / Year: 2021Title: Structures of the human cholecystokinin 1 (CCK1) receptor bound to Gs and Gq mimetic proteins provide insight into mechanisms of G protein selectivity. Authors: Jesse I Mobbs / Matthew J Belousoff / Kaleeckal G Harikumar / Sarah J Piper / Xiaomeng Xu / Sebastian G B Furness / Hari Venugopal / Arthur Christopoulos / Radostin Danev / Denise Wootten / ...Authors: Jesse I Mobbs / Matthew J Belousoff / Kaleeckal G Harikumar / Sarah J Piper / Xiaomeng Xu / Sebastian G B Furness / Hari Venugopal / Arthur Christopoulos / Radostin Danev / Denise Wootten / David M Thal / Laurence J Miller / Patrick M Sexton / ![]() Abstract: G protein-coupled receptors (GPCRs) are critical regulators of cellular function acting via heterotrimeric G proteins as their primary transducers with individual GPCRs capable of pleiotropic ...G protein-coupled receptors (GPCRs) are critical regulators of cellular function acting via heterotrimeric G proteins as their primary transducers with individual GPCRs capable of pleiotropic coupling to multiple G proteins. Structural features governing G protein selectivity and promiscuity are currently unclear. Here, we used cryo-electron microscopy (cryo-EM) to determine structures of the cholecystokinin (CCK) type 1 receptor (CCK1R) bound to the CCK peptide agonist, CCK-8 and 2 distinct transducer proteins, its primary transducer Gq, and the more weakly coupled Gs. As seen with other Gq/11-GPCR complexes, the Gq-α5 helix (αH5) bound to a relatively narrow pocket in the CCK1R core. Surprisingly, the backbone of the CCK1R and volume of the G protein binding pocket were essentially equivalent when Gs was bound, with the Gs αH5 displaying a conformation that arises from "unwinding" of the far carboxyl-terminal residues, compared to canonically Gs coupled receptors. Thus, integrated changes in the conformations of both the receptor and G protein are likely to play critical roles in the promiscuous coupling of individual GPCRs. #1: Journal: Biorxiv / Year: 2021Title: Structures of the human cholecystokinin 1 (CCK1) receptor bound to Gs and Gq mimetic proteins: insight into mechanisms of G protein selectivity Authors: Mobbs J / Belousoff MJ / Harikumar KG / Piper SJ / Xu X / Furness SGB / Venugopal H / Christopoulos A / Danev R / Wootten D / Thal DM / Miller LJ / Sexton PM | ||||||||||||
| History |
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Structure visualization
| Movie |
Movie viewer |
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| Structure viewer | EM map: SurfView Molmil Jmol/JSmol |
| Supplemental images |
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Downloads & links
-EMDB archive
| Map data | emd_23750.map.gz | 62 MB | EMDB map data format | |
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| Header (meta data) | emd-23750-v30.xml emd-23750.xml | 41.4 KB 41.4 KB | Display Display | EMDB header |
| Images | emd_23750.png | 122.8 KB | ||
| Masks | emd_23750_msk_1.map emd_23750_msk_2.map emd_23750_msk_3.map | 125 MB 125 MB 125 MB | Mask map | |
| Filedesc metadata | emd-23750.cif.gz | 8.4 KB | ||
| Others | emd_23750_additional_1.map.gz emd_23750_additional_2.map.gz emd_23750_additional_3.map.gz emd_23750_additional_4.map.gz emd_23750_additional_5.map.gz emd_23750_additional_6.map.gz emd_23750_half_map_1.map.gz emd_23750_half_map_2.map.gz | 116 MB 62 MB 116.1 MB 116.1 MB 62.4 MB 116 MB 116 MB 115.9 MB | ||
| Archive directory | http://ftp.pdbj.org/pub/emdb/structures/EMD-23750 ftp://ftp.pdbj.org/pub/emdb/structures/EMD-23750 | HTTPS FTP |
-Validation report
| Summary document | emd_23750_validation.pdf.gz | 932.3 KB | Display | EMDB validaton report |
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| Full document | emd_23750_full_validation.pdf.gz | 931.9 KB | Display | |
| Data in XML | emd_23750_validation.xml.gz | 13.9 KB | Display | |
| Data in CIF | emd_23750_validation.cif.gz | 16.4 KB | Display | |
| Arichive directory | https://ftp.pdbj.org/pub/emdb/validation_reports/EMD-23750 ftp://ftp.pdbj.org/pub/emdb/validation_reports/EMD-23750 | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 7mbyMC ![]() 7mbxC M: atomic model generated by this map C: citing same article ( |
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| Similar structure data |
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Links
| EMDB pages | EMDB (EBI/PDBe) / EMDataResource |
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| Related items in Molecule of the Month |
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Map
| File | Download / File: emd_23750.map.gz / Format: CCP4 / Size: 125 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Annotation | consensus map | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Projections & slices | Image control
Images are generated by Spider. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Voxel size | X=Y=Z: 0.65 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Density |
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| Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Details | EMDB XML:
CCP4 map header:
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-Supplemental data
+Mask #1
+Mask #2
+Mask #3
+Additional map: receptor focused half map A
+Additional map: Receptor focused
+Additional map: G protein focused
+Additional map: G protein focused map
+Additional map: G protein focused map
+Additional map: receptor focused half map B
+Half map: consensus half map 2
+Half map: consensus half map 1
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Sample components
+Entire : CCK1R/CCK-8/mGsqi complex
+Supramolecule #1: CCK1R/CCK-8/mGsqi complex
+Supramolecule #2: G protein subunit beta-1
+Supramolecule #3: G(sqi)-alpha/G protein subunit gamma-2
+Supramolecule #4: CCK1R
+Supramolecule #5: CCK-8
+Supramolecule #6: scFv16
+Macromolecule #1: Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
+Macromolecule #2: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
+Macromolecule #3: Cholecystokinin-8
+Macromolecule #4: Cholecystokinin receptor type A
+Macromolecule #5: Guanine nucleotide-binding protein G(i) subunit alpha-1,Guanine n...
+Macromolecule #6: CHOLESTEROL HEMISUCCINATE
-Experimental details
-Structure determination
| Method | cryo EM |
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Processing | single particle reconstruction |
| Aggregation state | particle |
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Sample preparation
| Buffer | pH: 7.4 |
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| Vitrification | Cryogen name: ETHANE |
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Electron microscopy
| Microscope | TFS KRIOS |
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| Image recording | Film or detector model: GATAN K3 BIOQUANTUM (6k x 4k) / Average electron dose: 63.9 e/Å2 |
| Electron beam | Acceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN |
| Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD |
| Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |
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About Yorodumi


Keywords
Homo sapiens (human)
Authors
Australia,
Japan, 3 items
Citation
UCSF Chimera









































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Y (Row.)
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Trichoplusia ni (cabbage looper)
Processing
