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- EMDB-17558: Cryo-EM structure of cortactin stabilized Arp2/3-complex nucleate... -
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Open data
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Basic information
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Title | Cryo-EM structure of cortactin stabilized Arp2/3-complex nucleated actin branches | |||||||||
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![]() | Complex / CONTRACTILE PROTEIN | |||||||||
Function / homology | ![]() cytoskeletal calyx / regulation of protein kinase C signaling / tubulobulbar complex / meiotic chromosome movement towards spindle pole / cytosolic transport / growth cone leading edge / lamellipodium organization / Advanced glycosylation endproduct receptor signaling / spindle localization / RHOF GTPase cycle ...cytoskeletal calyx / regulation of protein kinase C signaling / tubulobulbar complex / meiotic chromosome movement towards spindle pole / cytosolic transport / growth cone leading edge / lamellipodium organization / Advanced glycosylation endproduct receptor signaling / spindle localization / RHOF GTPase cycle / meiotic cytokinesis / Regulation of actin dynamics for phagocytic cup formation / EPHB-mediated forward signaling / Adherens junctions interactions / VEGFA-VEGFR2 Pathway / Cell-extracellular matrix interactions / RHO GTPases Activate WASPs and WAVEs / MAP2K and MAPK activation / UCH proteinases / Gap junction degradation / Formation of annular gap junctions / RHOF GTPase cycle / RHOD GTPase cycle / Clathrin-mediated endocytosis / Formation of the dystrophin-glycoprotein complex (DGC) / actin polymerization-dependent cell motility / muscle cell projection membrane / COPI-independent Golgi-to-ER retrograde traffic / Arp2/3 protein complex / asymmetric cell division / HSP90 chaperone cycle for steroid hormone receptors (SHR) in the presence of ligand / Arp2/3 complex-mediated actin nucleation / Arp2/3 complex binding / actin nucleation / F-actin capping protein complex / WASH complex / COPI-mediated anterograde transport / sperm head-tail coupling apparatus / mitotic spindle midzone / regulation of cell projection assembly / modification of postsynaptic actin cytoskeleton / actin cap / sperm head / regulation of mitophagy / profilin binding / cellular response to cytochalasin B / positive regulation of smooth muscle contraction / Factors involved in megakaryocyte development and platelet production / regulation of transepithelial transport / regulation of actin filament polymerization / morphogenesis of a polarized epithelium / structural constituent of postsynaptic actin cytoskeleton / substrate-dependent cell migration, cell extension / protein localization to adherens junction / positive regulation of chemotaxis / dense body / postsynaptic actin cytoskeleton / barbed-end actin filament capping / Tat protein binding / cell junction assembly / cell projection organization / MHC class II antigen presentation / focal adhesion assembly / actin polymerization or depolymerization / muscle cell development / adherens junction assembly / regulation of cell morphogenesis / proline-rich region binding / apical protein localization / RHO GTPases activate IQGAPs / RHO GTPases Activate Formins / tight junction / dendritic spine maintenance / podosome / lamellipodium assembly / regulation of axon extension / regulation of norepinephrine uptake / apical junction complex / transporter regulator activity / negative regulation of microtubule polymerization / nitric-oxide synthase binding / NuA4 histone acetyltransferase complex / establishment or maintenance of cell polarity / cortical cytoskeleton / positive regulation of actin filament polymerization / filamentous actin / brush border / kinesin binding / intercalated disc / asymmetric synapse / cilium assembly / regulation of synaptic vesicle endocytosis / RHO GTPases Activate WASPs and WAVEs / beta-tubulin binding / positive regulation of double-strand break repair via homologous recombination / regulation of protein localization to plasma membrane / positive regulation of lamellipodium assembly / extrinsic apoptotic signaling pathway / neuron projection morphogenesis / ruffle Similarity search - Function | |||||||||
Biological species | ![]() ![]() ![]() ![]() ![]() ![]() | |||||||||
Method | single particle reconstruction / cryo EM / Resolution: 3.3 Å | |||||||||
![]() | Liu T / Moores CA | |||||||||
Funding support | European Union, 1 items
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![]() | ![]() Title: Cortactin stabilizes actin branches by bridging activated Arp2/3 to its nucleated actin filament. Authors: Tianyang Liu / Luyan Cao / Miroslav Mladenov / Antoine Jegou / Michael Way / Carolyn A Moores / ![]() ![]() Abstract: Regulation of the assembly and turnover of branched actin filament networks nucleated by the Arp2/3 complex is essential during many cellular processes, including cell migration and membrane ...Regulation of the assembly and turnover of branched actin filament networks nucleated by the Arp2/3 complex is essential during many cellular processes, including cell migration and membrane trafficking. Cortactin is important for actin branch stabilization, but the mechanism by which this occurs is unclear. Given this, we determined the structure of vertebrate cortactin-stabilized Arp2/3 actin branches using cryogenic electron microscopy. We find that cortactin interacts with the new daughter filament nucleated by the Arp2/3 complex at the branch site, rather than the initial mother actin filament. Cortactin preferentially binds activated Arp3. It also stabilizes the F-actin-like interface of activated Arp3 with the first actin subunit of the new filament, and its central repeats extend along successive daughter-filament subunits. The preference of cortactin for activated Arp3 explains its retention at the actin branch and accounts for its synergy with other nucleation-promoting factors in regulating branched actin network dynamics. | |||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 163.1 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 34.6 KB 34.6 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 14.6 KB | Display | ![]() |
Images | ![]() | 72 KB | ||
Filedesc metadata | ![]() | 9.3 KB | ||
Others | ![]() ![]() | 301.6 MB 301.6 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 1.1 MB | Display | ![]() |
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Full document | ![]() | 1.1 MB | Display | |
Data in XML | ![]() | 24 KB | Display | |
Data in CIF | ![]() | 31.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 8p94MC C: citing same article ( M: atomic model generated by this map |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
EMDB pages | ![]() ![]() |
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Related items in Molecule of the Month |
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Map
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Projections & slices | Image control
Images are generated by Spider. | ||||||||||||||||||||||||||||||||||||
Voxel size | X=Y=Z: 1.067 Å | ||||||||||||||||||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Half map: #2
File | emd_17558_half_map_1.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Half map: #1
File | emd_17558_half_map_2.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
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Sample components
+Entire : Cortactin stabilizes Arp2/3-complex nucleated actin branches with...
+Supramolecule #1: Cortactin stabilizes Arp2/3-complex nucleated actin branches with...
+Supramolecule #2: Human Arp2/3 C1BC5L complex
+Supramolecule #3: Porcine actin, cytoplasmic 1
+Supramolecule #4: Mouse cortactin
+Supramolecule #5: Mouse capping protein
+Supramolecule #6: Phalloidin
+Macromolecule #1: Actin-related protein 3
+Macromolecule #2: Actin-related protein 2
+Macromolecule #3: Actin-related protein 2/3 complex subunit 1B
+Macromolecule #4: Actin-related protein 2/3 complex subunit 2
+Macromolecule #5: Actin-related protein 2/3 complex subunit 3
+Macromolecule #6: Actin-related protein 2/3 complex subunit 4
+Macromolecule #7: Actin-related protein 2/3 complex subunit 5-like protein
+Macromolecule #8: Actin, cytoplasmic 1
+Macromolecule #9: Src substrate cortactin
+Macromolecule #10: F-actin-capping protein subunit alpha-1
+Macromolecule #11: Isoform 2 of F-actin-capping protein subunit beta
+Macromolecule #12: Phalloidin
+Macromolecule #13: ADENOSINE-5'-DIPHOSPHATE
+Macromolecule #14: MAGNESIUM ION
-Experimental details
-Structure determination
Method | cryo EM |
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![]() | single particle reconstruction |
Aggregation state | particle |
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Sample preparation
Buffer | pH: 7.5 Details: 20 mM HEPES pH 7.5, 50mM KCl, 1mM EGTA, 1mM MgCl2, 0.2 mM ATP and 1 mM DTT |
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Vitrification | Cryogen name: ETHANE / Chamber humidity: 98 % / Chamber temperature: 295.15 K / Instrument: LEICA EM GP / Details: Back blotting. |
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Electron microscopy
Microscope | FEI TITAN KRIOS |
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Image recording | Film or detector model: GATAN K3 BIOQUANTUM (6k x 4k) / Average electron dose: 49.4 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 2.4 µm / Nominal defocus min: 0.9 µm / Nominal magnification: 81000 |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |
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Image processing
-Atomic model buiding 1
Initial model | Chain - Source name: AlphaFold / Chain - Initial model type: in silico model |
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Refinement | Protocol: OTHER |
Output model | ![]() PDB-8p94: |