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- EMDB-17558: Cryo-EM structure of cortactin stabilized Arp2/3-complex nucleate... -
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Open data
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Basic information
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Title | Cryo-EM structure of cortactin stabilized Arp2/3-complex nucleated actin branches | |||||||||
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![]() | Complex / CONTRACTILE PROTEIN | |||||||||
Function / homology | ![]() cytoskeletal calyx / regulation of protein kinase C signaling / tubulobulbar complex / meiotic chromosome movement towards spindle pole / cytosolic transport / growth cone leading edge / lamellipodium organization / Advanced glycosylation endproduct receptor signaling / RHOF GTPase cycle / spindle localization ...cytoskeletal calyx / regulation of protein kinase C signaling / tubulobulbar complex / meiotic chromosome movement towards spindle pole / cytosolic transport / growth cone leading edge / lamellipodium organization / Advanced glycosylation endproduct receptor signaling / RHOF GTPase cycle / spindle localization / meiotic cytokinesis / RHOD GTPase cycle / actin polymerization-dependent cell motility / COPI-independent Golgi-to-ER retrograde traffic / Regulation of actin dynamics for phagocytic cup formation / EPHB-mediated forward signaling / Adherens junctions interactions / VEGFA-VEGFR2 Pathway / Cell-extracellular matrix interactions / RHO GTPases Activate WASPs and WAVEs / MAP2K and MAPK activation / UCH proteinases / muscle cell projection membrane / Gap junction degradation / Formation of annular gap junctions / RHOF GTPase cycle / Clathrin-mediated endocytosis / Formation of the dystrophin-glycoprotein complex (DGC) / HSP90 chaperone cycle for steroid hormone receptors (SHR) in the presence of ligand / asymmetric cell division / Arp2/3 protein complex / Arp2/3 complex-mediated actin nucleation / actin nucleation / Arp2/3 complex binding / COPI-mediated anterograde transport / sperm head-tail coupling apparatus / F-actin capping protein complex / WASH complex / mitotic spindle midzone / regulation of cell projection assembly / modification of postsynaptic actin cytoskeleton / actin cap / sperm head / regulation of mitophagy / positive regulation of smooth muscle contraction / profilin binding / cellular response to cytochalasin B / Factors involved in megakaryocyte development and platelet production / regulation of actin filament polymerization / regulation of transepithelial transport / substrate-dependent cell migration, cell extension / morphogenesis of a polarized epithelium / structural constituent of postsynaptic actin cytoskeleton / positive regulation of chemotaxis / protein localization to adherens junction / dense body / cell junction assembly / barbed-end actin filament capping / postsynaptic actin cytoskeleton / MHC class II antigen presentation / Tat protein binding / focal adhesion assembly / cell projection organization / actin polymerization or depolymerization / muscle cell development / regulation of cell morphogenesis / proline-rich region binding / adherens junction assembly / apical protein localization / RHO GTPases activate IQGAPs / RHO GTPases Activate Formins / dendritic spine maintenance / tight junction / podosome / lamellipodium assembly / regulation of axon extension / apical junction complex / regulation of norepinephrine uptake / transporter regulator activity / negative regulation of microtubule polymerization / nitric-oxide synthase binding / cortical cytoskeleton / establishment or maintenance of cell polarity / NuA4 histone acetyltransferase complex / positive regulation of actin filament polymerization / filamentous actin / brush border / neuron projection morphogenesis / intercalated disc / kinesin binding / asymmetric synapse / cilium assembly / RHO GTPases Activate WASPs and WAVEs / regulation of synaptic vesicle endocytosis / beta-tubulin binding / regulation of protein localization to plasma membrane / positive regulation of double-strand break repair via homologous recombination / positive regulation of lamellipodium assembly / extrinsic apoptotic signaling pathway / ruffle Similarity search - Function | |||||||||
Biological species | ![]() ![]() ![]() ![]() ![]() ![]() | |||||||||
Method | single particle reconstruction / cryo EM / Resolution: 3.3 Å | |||||||||
![]() | Liu T / Moores CA | |||||||||
Funding support | European Union, 1 items
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![]() | ![]() Title: Cortactin stabilizes actin branches by bridging activated Arp2/3 to its nucleated actin filament. Authors: Tianyang Liu / Luyan Cao / Miroslav Mladenov / Antoine Jegou / Michael Way / Carolyn A Moores / ![]() ![]() Abstract: Regulation of the assembly and turnover of branched actin filament networks nucleated by the Arp2/3 complex is essential during many cellular processes, including cell migration and membrane ...Regulation of the assembly and turnover of branched actin filament networks nucleated by the Arp2/3 complex is essential during many cellular processes, including cell migration and membrane trafficking. Cortactin is important for actin branch stabilization, but the mechanism by which this occurs is unclear. Given this, we determined the structure of vertebrate cortactin-stabilized Arp2/3 actin branches using cryogenic electron microscopy. We find that cortactin interacts with the new daughter filament nucleated by the Arp2/3 complex at the branch site, rather than the initial mother actin filament. Cortactin preferentially binds activated Arp3. It also stabilizes the F-actin-like interface of activated Arp3 with the first actin subunit of the new filament, and its central repeats extend along successive daughter-filament subunits. The preference of cortactin for activated Arp3 explains its retention at the actin branch and accounts for its synergy with other nucleation-promoting factors in regulating branched actin network dynamics. | |||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 163.1 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 34.6 KB 34.6 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 14.6 KB | Display | ![]() |
Images | ![]() | 72 KB | ||
Filedesc metadata | ![]() | 9.3 KB | ||
Others | ![]() ![]() | 301.6 MB 301.6 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 1.1 MB | Display | ![]() |
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Full document | ![]() | 1.1 MB | Display | |
Data in XML | ![]() | 24 KB | Display | |
Data in CIF | ![]() | 31.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 8p94MC C: citing same article ( M: atomic model generated by this map |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
EMDB pages | ![]() ![]() |
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Related items in Molecule of the Month |
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Map
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Projections & slices | Image control
Images are generated by Spider. | ||||||||||||||||||||||||||||||||||||
Voxel size | X=Y=Z: 1.067 Å | ||||||||||||||||||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Half map: #2
File | emd_17558_half_map_1.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Half map: #1
File | emd_17558_half_map_2.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
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Sample components
+Entire : Cortactin stabilizes Arp2/3-complex nucleated actin branches with...
+Supramolecule #1: Cortactin stabilizes Arp2/3-complex nucleated actin branches with...
+Supramolecule #2: Human Arp2/3 C1BC5L complex
+Supramolecule #3: Porcine actin, cytoplasmic 1
+Supramolecule #4: Mouse cortactin
+Supramolecule #5: Mouse capping protein
+Supramolecule #6: Phalloidin
+Macromolecule #1: Actin-related protein 3
+Macromolecule #2: Actin-related protein 2
+Macromolecule #3: Actin-related protein 2/3 complex subunit 1B
+Macromolecule #4: Actin-related protein 2/3 complex subunit 2
+Macromolecule #5: Actin-related protein 2/3 complex subunit 3
+Macromolecule #6: Actin-related protein 2/3 complex subunit 4
+Macromolecule #7: Actin-related protein 2/3 complex subunit 5-like protein
+Macromolecule #8: Actin, cytoplasmic 1
+Macromolecule #9: Src substrate cortactin
+Macromolecule #10: F-actin-capping protein subunit alpha-1
+Macromolecule #11: Isoform 2 of F-actin-capping protein subunit beta
+Macromolecule #12: Phalloidin
+Macromolecule #13: ADENOSINE-5'-DIPHOSPHATE
+Macromolecule #14: MAGNESIUM ION
-Experimental details
-Structure determination
Method | cryo EM |
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![]() | single particle reconstruction |
Aggregation state | particle |
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Sample preparation
Buffer | pH: 7.5 Details: 20 mM HEPES pH 7.5, 50mM KCl, 1mM EGTA, 1mM MgCl2, 0.2 mM ATP and 1 mM DTT |
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Vitrification | Cryogen name: ETHANE / Chamber humidity: 98 % / Chamber temperature: 295.15 K / Instrument: LEICA EM GP / Details: Back blotting. |
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Electron microscopy
Microscope | FEI TITAN KRIOS |
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Image recording | Film or detector model: GATAN K3 BIOQUANTUM (6k x 4k) / Average electron dose: 49.4 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 2.4 µm / Nominal defocus min: 0.9 µm / Nominal magnification: 81000 |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |
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Image processing
-Atomic model buiding 1
Initial model | Chain - Source name: AlphaFold / Chain - Initial model type: in silico model |
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Refinement | Protocol: OTHER |
Output model | ![]() PDB-8p94: |