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- SASDGD2: Putative mitochondrial transferase CAF17: human IBA57 -

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Basic information

Entry
Database: SASBDB / ID: SASDGD2
SamplePutative mitochondrial transferase CAF17: human IBA57
  • Putative transferase CAF17, mitochondrial (protein), IBA57, Homo sapiens
Function / homology
Function and homology information


Transferases; Transferring one-carbon groups / heme biosynthetic process / iron-sulfur cluster assembly / transferase activity / mitochondrial matrix / mitochondrion / RNA binding
Similarity search - Function
YgfZ/GcvT conserved site / YgfZ/GcvT / GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1
Similarity search - Domain/homology
Putative transferase CAF17, mitochondrial
Similarity search - Component
Biological speciesHomo sapiens (human)
Contact author
  • Stefano Da Vela (EMBL-Hamburg, European Molecular Biology Laboratory (EMBL) - Hamburg outstation, Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #3571
Type: atomic / Radius of dummy atoms: 1.90 A / Chi-square value: 1.075
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Putative mitochondrial transferase CAF17: human IBA57 / Specimen concentration: 5 mg/ml
BufferName: 50 mM phosphate, 150 mM NaCl, 5 mM DTT / pH: 7
Entity #1801Name: IBA57 / Type: protein / Description: Putative transferase CAF17, mitochondrial / Formula weight: 33.242 / Num. of mol.: 1 / Source: Homo sapiens / References: UniProt: Q5T440
Sequence: AGAAWACFRL DGRTLLRVRG PDAAPFLLGL LTNELPLPSP AAAGAPPAAR AGYAHFLNVQ GRTLYDVILY GLQEHSEVSG FLLECDSSVQ GALQKHLALY RIRRKVTVEP HPELRVWAVL PSSPEACGAA SLQERAGAAA ILIRDPRTAR MGWRLLTQDE GPALVPGGRL ...Sequence:
AGAAWACFRL DGRTLLRVRG PDAAPFLLGL LTNELPLPSP AAAGAPPAAR AGYAHFLNVQ GRTLYDVILY GLQEHSEVSG FLLECDSSVQ GALQKHLALY RIRRKVTVEP HPELRVWAVL PSSPEACGAA SLQERAGAAA ILIRDPRTAR MGWRLLTQDE GPALVPGGRL GDLWDYHQHR YLQGVPEGVR DLPPGVALPL ESNLAFMNGV SFTKGCYIGQ ELTARTHHMG VIRKRLFPVR FLDPLPTSGI TPGATVLTAS GQTVGKFRAG QGNVGLALLW SEKIKGPLHI RASEGAQVAL AASVPDWWP

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Experimental information

BeamInstrument name: PETRA III EMBL P12 / City: Hamburg / 国: Germany / Type of source: X-ray synchrotron / Wavelength: 0.124 Å / Dist. spec. to detc.: 3 mm
DetectorName: Pilatus 6M
Scan
Title: Putative mitochondrial transferase CAF17: human IBA57
Measurement date: Jul 10, 2018 / Storage temperature: 20 °C / Cell temperature: 20 °C / Exposure time: 0.995 sec. / Number of frames: 3000 / Unit: 1/nm /
MinMax
Q0.1226 3.6959
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 1296 /
MinMax
Q0.122607 3.69587
P(R) point1 1296
R0 7.14
Result
Type of curve: sec /
ExperimentalPorod
MW25.6 kDa31 kDa
Volume-50 nm3

P(R)GuinierGuinier error
Forward scattering, I0177.3 177 0.39
Radius of gyration, Rg2.172 nm2.16 nm0.015

MinMax
D-7.14
Guinier point3 174

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