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Yorodumi- SASDF39: Double-stranded RNA-binding protein Staufen homolog 1 - RNA bindi... -
+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDF39 |
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Sample | Double-stranded RNA-binding protein Staufen homolog 1 - RNA binding domain 3 and 4 - in complex with STAU1 binding site within the ADP-ribosylation factor1
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Function / homology | Function and homology information lncRNA-mediated post-transcriptional gene silencing / anterograde dendritic transport of messenger ribonucleoprotein complex / : / modification of postsynaptic structure / intracellular mRNA localization / protein localization to synapse / protein phosphatase 1 binding / positive regulation by virus of viral protein levels in host cell / microtubule associated complex / germ cell development ...lncRNA-mediated post-transcriptional gene silencing / anterograde dendritic transport of messenger ribonucleoprotein complex / : / modification of postsynaptic structure / intracellular mRNA localization / protein localization to synapse / protein phosphatase 1 binding / positive regulation by virus of viral protein levels in host cell / microtubule associated complex / germ cell development / positive regulation of viral genome replication / rough endoplasmic reticulum / dendrite cytoplasm / positive regulation of long-term synaptic potentiation / cytoplasmic ribonucleoprotein granule / cytoplasmic stress granule / double-stranded RNA binding / cellular response to oxidative stress / cell body / neuron projection / mRNA binding / neuronal cell body / glutamatergic synapse / dendrite / endoplasmic reticulum / RNA binding / extracellular exosome / membrane / plasma membrane / cytoplasm / cytosol Similarity search - Function |
Biological species | Homo sapiens (human) |
Contact author |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Data source
SASBDB page | SASDF39 |
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-Related structure data
Similar structure data |
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-External links
Related items in Molecule of the Month |
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-Models
Model #3216 | Type: atomic / Chi-square value: 1.244 / P-value: 0.327758 Search similar-shape structures of this assembly by Omokage search (details) |
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-Sample
Sample | Name: Double-stranded RNA-binding protein Staufen homolog 1 - RNA binding domain 3 and 4 - in complex with STAU1 binding site within the ADP-ribosylation factor1 Specimen concentration: 3 mg/ml / Entity id: 1741 / 1743 |
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Buffer | Name: 50 mM sodium phosphate buffer, 300 mM NaCl, 500 mM imidazole pH: 8 |
Entity #1741 | Name: ARF1 RNA - short / Type: RNA / Description: ADP-ribosylation factor1 - short / Formula weight: 10.962 / Num. of mol.: 1 / Source: Homo sapiens Sequence: GGCAGAAGCU GCCUCUUCGG AGGCAGUUUC UGCC |
Entity #1743 | Name: STAU1-RBD34 / Type: protein Description: Double-stranded RNA-binding protein Staufen homolog 1 - RNA binding domain 3 and 4 Formula weight: 19.733 / Num. of mol.: 1 / Source: Homo sapiens / References: UniProt: O95793 Sequence: GSHMKSEISQ VFEIALKRNL PVNFEVARES GPPHMKNFVT KVSVGEFVGE GEGKSKKISK KNAAIAVLEE LKKLPPLPAV ERVKPRIKKK TKPIVKPQTS PEYGQGINPI SRLAQIQQAK KEKEPEYTLL TERGLPRRRE FVMQVKVGNH TAEGTGTNKK VAKRNAAENM LEILGFK |
-Experimental information
Beam | Instrument name: CEITEC Rigaku BioSAXS-1000 / City: Brno / 国: Czech Republic / Type of source: X-ray in house / Wavelength: 0.154 Å / Dist. spec. to detc.: 0.48 mm | ||||||||||||||||||||||||||||||
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Detector | Name: Pilatus 100K / Pixsize x: 172 mm | ||||||||||||||||||||||||||||||
Scan | Title: Double-stranded RNA-binding protein Staufen homolog 1 - RNA binding domain 3 and 4 - in complex with STAU1 binding site within the ADP-ribosylation factor1 Measurement date: May 29, 2018 / Storage temperature: 20 °C / Cell temperature: 35 °C / Exposure time: 600 sec. / Number of frames: 6 / Unit: 1/A /
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Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 198 /
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Result | Type of curve: single_conc /
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