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- SASDE28: C-terminal truncated ovine prion protein (94-234) with VRQ polymo... -

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Basic information

Entry
Database: SASBDB / ID: SASDE28
SampleC-terminal truncated ovine prion protein (94-234) with VRQ polymorphism
  • Major prion protein (protein), Ovis aries
Function / homology
Function and homology information


side of membrane / tubulin binding / protein homooligomerization / microtubule binding / copper ion binding / Golgi apparatus / identical protein binding / plasma membrane
Similarity search - Function
Major prion protein N-terminal domain / Major prion protein bPrPp - N terminal / Prion protein signature 1. / Prion protein signature 2. / Prion protein / Major prion protein / Prion/Doppel protein, beta-ribbon domain / Prion/Doppel beta-ribbon domain superfamily / Prion/Doppel alpha-helical domain
Similarity search - Domain/homology
Biological speciesOvis aries (sheep)
Contact author
  • Gabriele Giachin (ESRF, European Synchrotron Radiation Facility, Grenoble, France)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #2624
Type: mix / Symmetry: P1 / Chi-square value: 2.741 / P-value: 0.000059
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: C-terminal truncated ovine prion protein (94-234) with VRQ polymorphism
Specimen concentration: 7 mg/ml
BufferName: 25 mM Ammonium Acetate, 250 mM NaCl / pH: 5.5
Entity #1374Type: protein / Description: Major prion protein / Formula weight: 16.085 / Num. of mol.: 1 / Source: Ovis aries / References: UniProt: P23907
Sequence:
GQGGSHSQWN KPSKPKTNMK HVAGAAAAGA VVGGLGGYML GSVMSRPLIH FGNDYEDRYY RENMYRYPNQ VYYRPVDQYS NQNNFVHDCV NITVKQHTVQ TTTKGENFTE TDIKIMERVV EQMCITQYQR ESQAYYQRGA S

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Experimental information

BeamInstrument name: ESRF BM29 / City: Grenoble / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.099 Å / Dist. spec. to detc.: 2.864 mm
DetectorName: Pilatus 1M / Type: Dectris / Pixsize x: 172 mm
Scan
Title: C-terminal truncated ovine prion protein (94-234) with VRQ polymorphism
Measurement date: May 4, 2018 / Storage temperature: 20 °C / Cell temperature: 20 °C / Exposure time: 1 sec. / Number of frames: 1 / Unit: 1/nm /
MinMax
Q0.1004 4.9277
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 586 /
MinMax
Q0.100424 2.84746
P(R) point1 586
R0 9.1
Result
Type of curve: sec
ExperimentalStandardPorod
MW16.1 kDa15.2 kDa14.4 kDa
Volume--28.74 nm3

P(R)GuinierGuinier error
Forward scattering, I012.06 11.69 0.024
Radius of gyration, Rg2.311 nm2.1 nm0.01

MinMax
D-9.1
Guinier point38 113

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