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Yorodumi- SASDCB6: Nmul_A1745 protein from Nitrosospira multiformis, Northeast Struc... -
+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDCB6 |
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Sample | Nmul_A1745 protein from Nitrosospira multiformis, Northeast Structural Genomics Consortium Target NmR72
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Function / homology | Uncharacterized cysteine-rich protein YhjQ-like / Ferredoxin Function and homology information |
Biological species | Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849 / C 71) (bacteria) |
Citation | Journal: Biopolymers / Year: 2011 Title: Small angle X-ray scattering as a complementary tool for high-throughput structural studies. Authors: Thomas D Grant / Joseph R Luft / Jennifer R Wolfley / Hiro Tsuruta / Anne Martel / Gaetano T Montelione / Edward H Snell / Abstract: Structural crystallography and nuclear magnetic resonance (NMR) spectroscopy are the predominant techniques for understanding the biological world on a molecular level. Crystallography is constrained ...Structural crystallography and nuclear magnetic resonance (NMR) spectroscopy are the predominant techniques for understanding the biological world on a molecular level. Crystallography is constrained by the ability to form a crystal that diffracts well and NMR is constrained to smaller proteins. Although powerful techniques, they leave many soluble, purified structurally uncharacterized protein samples. Small angle X-ray scattering (SAXS) is a solution technique that provides data on the size and multiple conformations of a sample, and can be used to reconstruct a low-resolution molecular envelope of a macromolecule. In this study, SAXS has been used in a high-throughput manner on a subset of 28 proteins, where structural information is available from crystallographic and/or NMR techniques. These crystallographic and NMR structures were used to validate the accuracy of molecular envelopes reconstructed from SAXS data on a statistical level, to compare and highlight complementary structural information that SAXS provides, and to leverage biological information derived by crystallographers and spectroscopists from their structures. All the ab initio molecular envelopes calculated from the SAXS data agree well with the available structural information. SAXS is a powerful albeit low-resolution technique that can provide additional structural information in a high-throughput and complementary manner to improve the functional interpretation of high-resolution structures. |
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Models
Model #1409 | Type: dummy / Radius of dummy atoms: 2.00 A / Chi-square value: 2.119936 Search similar-shape structures of this assembly by Omokage search (details) |
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Model #1416 | Type: atomic / Radius of dummy atoms: 1.90 A / Chi-square value: 2.6569 Search similar-shape structures of this assembly by Omokage search (details) |
-Sample
Sample | Name: Nmul_A1745 protein from Nitrosospira multiformis, Northeast Structural Genomics Consortium Target NmR72 Specimen concentration: 0.73-2.23 |
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Buffer | Name: 5 mM DTT 100 mM NaCl 10 mM Tris-HCl 0.02 % NaN3 / pH: 7.5 |
Entity #745 | Type: protein / Description: Uncharacterized protein / Formula weight: 13.694 / Num. of mol.: 4 Source: Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849 / C 71) References: UniProt: Q2Y879 Sequence: MFLYTETDQN LQACIDACNH CYRTCLRMAM NHCLEAGGKH VEADHLRLMM NCAEICQTSL NFMLSGSRFS PKVCGVCAEI CDACAKSCEQ LDGMEECVQT CRQCAEHCRK MAALEHHHHH H |
-Experimental information
Beam | Instrument name: Stanford Synchrotron Radiation Lightsource (SSRL) BL4-2 City: Stanford, CA / 国: USA / Type of source: X-ray synchrotron / Wavelength: 0.13 Å / Dist. spec. to detc.: 1.5 mm | ||||||||||||||||||
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Detector | Name: Rayonix MX225-HE | ||||||||||||||||||
Scan | Title: Nmul_A1745 protein from Nitrosospira multiformis, Northeast Structural Genomics Consortium Target NmR72 Measurement date: Feb 12, 2010 / Storage temperature: -80 °C / Cell temperature: 20 °C / Exposure time: 1 sec. / Number of frames: 20 / Unit: 1/A /
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Distance distribution function P(R) | Sofotware P(R): GNOM 4.5a / Number of points: 399 /
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Result | D max: 7.53 / Type of curve: single_conc /
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