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Yorodumi- SASDBJ2: Wild-type archaeal biofilm regulator 1 (ABfR1) bound to 40bp dsDN... -
+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDBJ2 |
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Sample | Wild-type archaeal biofilm regulator 1 (ABfR1) bound to 40bp dsDNA-Sa oligonucleotide.
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Function / homology | Transcription regulator TrmB, N-terminal / Sugar-specific transcriptional regulator TrmB / Winged helix DNA-binding domain superfamily / Winged helix-like DNA-binding domain superfamily / Transcriptional regulator ArsR family Function and homology information |
Biological species | Sulfolobus acidocaldarius (acidophilic) |
Contact author |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Models
Model #400 | Type: dummy / Radius of dummy atoms: 4.20 A / Chi-square value: 1.547 / P-value: 0.000002 Search similar-shape structures of this assembly by Omokage search (details) |
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-Sample
Sample | Name: Wild-type archaeal biofilm regulator 1 (ABfR1) bound to 40bp dsDNA-Sa oligonucleotide. Specimen concentration: 3.5 mg/ml / Entity id: 262 / 263 |
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Buffer | Name: 0.5 x Tris/Borate/EDTA (TBE) / Concentration: 0.50 v/v |
Entity #262 | Name: dsDNA-Sa Oligo / Type: DNA / Description: 40bp long dsDNA-Sa Oligonucleotide / Formula weight: 24.7 / Num. of mol.: 1 Sequence: GTAGTAAGAT TTAAAAAAAC ATACTAAGAT ATAAATTAAC |
Entity #263 | Name: ABfR1-WT / Type: protein Description: Wild-type archaeal biofilm regulator 1 (ABfR1: Transcriptional regulator ArsR family). Formula weight: 13.16 / Num. of mol.: 2 / Source: Sulfolobus acidocaldarius / References: UniProt: Q4JBH1 Sequence: MSIEITEKYV ILKRFLSVAY GLSESEIDTF LRILESKEGK DIDAISAELK ISKSRTSIIL KKLSDAGLVD KEKGDNMKGG RPKYVYSVNK EELKNRLIAK SEELCKELNQ VIKSFI |
-Experimental information
Beam | Instrument name: ESRF BM29 / City: Grenoble / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.93 Å / Dist. spec. to detc.: 2.43 mm | ||||||||||||||||||||||||||
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Detector | Name: Pilatus 1M | ||||||||||||||||||||||||||
Scan | Title: WT archaeal biofilm regulator 1 (ABfR1) + DNA / Measurement date: Aug 27, 2015 / Storage temperature: 4 °C / Cell temperature: 4 °C / Exposure time: 20 sec. / Number of frames: 10 / Unit: 1/nm /
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Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 455 /
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Result | Type of curve: single_conc /
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