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- SASDA92: Catalase in PBS (Catalase) -

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Basic information

Entry
Database: SASBDB / ID: SASDA92
SampleCatalase in PBS
  • Catalase (protein), Bos taurus
Function / homologyCatalase, mono-functional, haem-containing / Catalase proximal heme-ligand signature. / Catalase / Catalase superfamily / Catalase proximal active site signature. / catalase family profile. / Detoxification of Reactive Oxygen Species / Catalase-related immune-responsive / Catalase, mono-functional, haem-containing, clades 1 and 3 / Catalase active site ...Catalase, mono-functional, haem-containing / Catalase proximal heme-ligand signature. / Catalase / Catalase superfamily / Catalase proximal active site signature. / catalase family profile. / Detoxification of Reactive Oxygen Species / Catalase-related immune-responsive / Catalase, mono-functional, haem-containing, clades 1 and 3 / Catalase active site / Catalase haem-binding site / Catalase immune-responsive domain / Neutrophil degranulation / Peroxisomal protein import / Catalase core domain / hemoglobin metabolic process / aminoacylase activity / UV protection / catalase / triglyceride metabolic process / peroxisomal membrane / catalase activity / aerobic respiration / negative regulation of NF-kappaB transcription factor activity / positive regulation of cell division / cholesterol metabolic process / hydrogen peroxide catabolic process / peroxisome / response to hydrogen peroxide / protein homotetramerization / NADP binding / positive regulation of phosphatidylinositol 3-kinase signaling / oxidation-reduction process / positive regulation of NF-kappaB transcription factor activity / signaling receptor binding / heme binding / negative regulation of apoptotic process / enzyme binding / mitochondrion / protein homodimerization activity / metal ion binding / Catalase
Function and homology information
SourceBos taurus (cattle)
Contact authorDarja Ruskule (EMBL-Hamburg, European Molecular Biology Laboratory (EMBL) - Hamburg outstation, Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany)

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Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #12
Type: atomic / Software: crysol / Chi-square value: 8.602489
Search similar-shape structures of this assembly by Omokage search (details)
Model #214
Type: dummy / Software: DAMMIF / Radius of dummy atoms: 1.90 A / Symmetry: P4 / Chi-square value: 4.460544
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Catalase in PBS / Ext coefficient: 10.95 / Sample MW: 232 / Specimen concentration: 0.09-6.93 / Concentration method: nanodrop / Entity id: 11
BufferName: PBS / PK: 7 / pH: 7.4 / Sample id: 6
Entity #11Name: , , / Type: protein / Description: Catalase / Formula weight: 59.91 / Number of molecules: 4 / Source: Bos taurus / References: UniProt: P00432
Sequence:
MADNRDPASD QMKHWKEQRA AQKPDVLTTG GGNPVGDKLN SLTVGPRGPL LVQDVVFTDE MAHFDRERIP ERVVHAKGAG AFGYFEVTHD ITRYSKAKVF EHIGKRTPIA VRFSTVAGES GSADTVRDPR GFAVKFYTED GNWDLVGNNT PIFFIRDALL FPSFIHSQKR NPQTHLKDPD MVWDFWSLRP ESLHQVSFLF SDRGIPDGHR HMNGYGSHTF KLVNANGEAV YCKFHYKTDQ GIKNLSVEDA ARLAHEDPDY GLRDLFNAIA TGNYPSWTLY IQVMTFSEAE IFPFNPFDLT KVWPHGDYPL IPVGKLVLNR NPVNYFAEVE QLAFDPSNMP PGIEPSPDKM LQGRLFAYPD THRHRLGPNY LQIPVNCPYR ARVANYQRDG PMCMMDNQGG APNYYPNSFS APEHQPSALE HRTHFSGDVQ RFNSANDDNV TQVRTFYLKV LNEEQRKRLC ENIAGHLKDA QLFIQKKAVK NFSDVHPEYG SRIQALLDKY NEEKPKNAVH TYVQHGSHLS AREKANL

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Experimental information

BeamInstrument name: DORIS III X33 / Instrument city: Hamburg / Instrument country: Germany / Shape: 0.6 / Type of source: X-ray synchrotronSynchrotron / Radiation wavelength: 0.15 / Dist spec to detc: 2.7
DetectorName: Pilatus 1M-W / Pixsize x: 0.172
Scan
Detc id: 1 / Measurement date: Sep 17, 2012 / Storage temperature: 1 / Cell temperature: 1 / Exposure time: 15 / Number of frames: 8 / Unit: 1/nm / Qmin: 0.1828 / Qmax: 6.0145 / Sample id: 6 / Result id: 8 / Beam id: 1
Distance distribution function P(R)
Intensity id: 8 / Software p of R: GNOM 5.0 / Number of points: 603 / Qmin: 0.283976 / Qmax: 1.9326 / P of R point min: 1 / P of R point max: 603 / Rmin: 0 / Rmax: 10.9
Result
SASBDB code: SASDA92 / Experimental MW: 254 / MW standard: 254 / I0 from PR: 198.2 / I0 from Guinier: 222 / Rg from PR: 3.74 / Rg from Guinier: 4.1 / D max: 10.9 / Porod volume: 296 / Guinier point min: 1 / Guinier point max: 48 / Type of curve: extrapolated / Standard: BSA

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