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- ChemComp-PUY: PUROMYCIN -

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Basic information

EntryDatabase: PDB chemical components / ID: PUY
NameName: puromycin

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Chemical information

Composition
Formula: C22H29N7O5 / Number of atoms: 63 / Formula weight: 471.51 / Formal charge: 0
Others

1q7y

Type: RNA LINKING / PDB classification: ATOMN / One letter code: N / Three letter code: PUY / Model coordinates PDB-ID: 1Q7Y
History
Create componentAug 25, 2003
Modify descriptorJun 4, 2011
External linksUniChem / ChemSpider / Wikipedia search / Google search

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Details

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SMILES

ACDLabs 10.04O=C(NC3C(OC(n2cnc1c2ncnc1N(C)C)C3O)CO)C(N)Cc4ccc(OC)cc4
CACTVS 3.341COc1ccc(C[CH](N)C(=O)N[CH]2[CH](O)[CH](O[CH]2CO)n3cnc4c(ncnc34)N(C)C)cc1
OpenEye OEToolkits 1.5.0CN(C)c1c2c(ncn1)n(cn2)C3C(C(C(O3)CO)NC(=O)C(Cc4ccc(cc4)OC)N)O

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SMILES CANONICAL

CACTVS 3.341COc1ccc(C[C@H](N)C(=O)N[C@H]2[C@@H](O)[C@@H](O[C@@H]2CO)n3cnc4c(ncnc34)N(C)C)cc1
OpenEye OEToolkits 1.5.0CN(C)c1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)NC(=O)[C@H](Cc4ccc(cc4)OC)N)O

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InChI

InChI 1.03InChI=1S/C22H29N7O5/c1-28(2)19-17-20(25-10-24-19)29(11-26-17)22-18(31)16(15(9-30)34-22)27-21(32)14(23)8-12-4-6-13(33-3)7-5-12/h4-7,10-11,14-16,18,22,30-31H,8-9,23H2,1-3H3,(H,27,32)/t14-,15+,16+,18+,22+/m0/s1

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InChIKey

InChI 1.03RXWNCPJZOCPEPQ-NVWDDTSBSA-N

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SYSTEMATIC NAME

ACDLabs 10.043'-deoxy-N,N-dimethyl-3'-[(O-methyl-L-tyrosyl)amino]adenosine
OpenEye OEToolkits 1.5.0(2S)-2-amino-N-[(2S,3S,4R,5R)-5-(6-dimethylaminopurin-9-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl]-3-(4-methoxyphenyl)propanamide

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PDB entries

Showing all 6 items

PDB-1q7y:
Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit

PDB-2dpt:
Leucyl/phenylalanyl-tRNA-protein transferase complexed with puromycin

PDB-3q3d:
Crystal structure of BmrR bound to puromycin

PDB-4tva:
Universal Pathway for Post-Transfer Editing Reactions: Insight from Crystal structure of TthPheRS with Puromycine

PDB-5nc5:
Crystal structure of AcrBZ in complex with antibiotic puromycin

PDB-5yo1:
Structure of ePepN E298A mutant in complex with Puromycin

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