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- PDB-9v7i: Phycobilisome rod R3 from Gloeobacter violaceus PCC 7421 -

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IDまたはキーワード:

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基本情報

登録情報
データベース: PDB / ID: 9v7i
タイトルPhycobilisome rod R3 from Gloeobacter violaceus PCC 7421
要素
  • (Phycobilisome rod linker polypeptide ...) x 2
  • Glr1262 protein
  • Phycocyanin alpha chain
  • Phycocyanin beta chain
キーワードPHOTOSYNTHESIS / Phycobilisome
機能・相同性
機能・相同性情報


phycobilisome / plasma membrane-derived thylakoid membrane / photosynthesis
類似検索 - 分子機能
Phycobilisome linker domain / Phycobilisome linker domain superfamily / Phycobilisome Linker polypeptide / Phycobilisome (PBS) linker domain profile. / Phycobilisome, alpha/beta subunit / Phycobilisome, alpha/beta subunit superfamily / Phycobilisome protein / Globin-like superfamily
類似検索 - ドメイン・相同性
PHYCOCYANOBILIN / Phycocyanin beta chain / Phycocyanin alpha chain / Glr1262 protein
類似検索 - 構成要素
生物種Gloeobacter violaceus PCC 7421 (バクテリア)
手法電子顕微鏡法 / 単粒子再構成法 / クライオ電子顕微鏡法 / 解像度: 3.03 Å
データ登録者Burtseva, A.D. / Baymukhametov, T.N. / Slonimskiy, Y.B. / Popov, V.O. / Sluchanko, N.N. / Boyko, K.M.
資金援助 ロシア, 1件
組織認可番号
Russian Science Foundation23-74-00062 ロシア
引用ジャーナル: To Be Published
タイトル: Structure and quenching of a bundle-shaped phycobilisome
著者: Burtseva, A.D. / Slonimskiy, Y.B. / Baymukhametov, T.N. / Sinetova, M.A. / Maksimov, E.G. / Popov, V.O. / Boyko, K.M. / Sluchanko, N.N.
履歴
登録2025年5月28日登録サイト: PDBJ / 処理サイト: PDBJ
改定 1.02025年9月24日Provider: repository / タイプ: Initial release
改定 1.02025年9月24日Data content type: EM metadata / Data content type: EM metadata / Provider: repository / タイプ: Initial release
改定 1.02025年9月24日Data content type: Half map / Part number: 1 / Data content type: Half map / Provider: repository / タイプ: Initial release
改定 1.02025年9月24日Data content type: Half map / Part number: 2 / Data content type: Half map / Provider: repository / タイプ: Initial release
改定 1.02025年9月24日Data content type: Image / Data content type: Image / Provider: repository / タイプ: Initial release
改定 1.02025年9月24日Data content type: Primary map / Data content type: Primary map / Provider: repository / タイプ: Initial release

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

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集合体

登録構造単位
A: Phycobilisome rod linker polypeptide CpcC1
B: Phycocyanin beta chain
C: Phycocyanin alpha chain
D: Phycocyanin beta chain
E: Phycocyanin alpha chain
F: Phycocyanin beta chain
G: Phycocyanin alpha chain
H: Phycocyanin beta chain
I: Phycocyanin alpha chain
J: Phycocyanin beta chain
K: Phycocyanin alpha chain
L: Phycocyanin beta chain
M: Phycobilisome rod linker polypeptide CpcC2
N: Phycocyanin alpha chain
O: Phycocyanin beta chain
P: Phycocyanin alpha chain
Q: Phycocyanin beta chain
R: Phycocyanin alpha chain
S: Phycocyanin beta chain
T: Phycocyanin alpha chain
U: Phycocyanin beta chain
V: Phycocyanin alpha chain
W: Phycocyanin beta chain
X: Phycocyanin alpha chain
Y: Phycocyanin beta chain
a: Phycocyanin alpha chain
Z: Glr1262 protein
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)609,22563
ポリマ-588,03227
非ポリマー21,19336
00
1


  • 登録構造と同一
  • 登録者が定義した集合体
  • 根拠: 電子顕微鏡法, not applicable
タイプ名称対称操作
identity operation1_5551
非結晶学的対称性 (NCS)NCSドメイン:
IDEns-ID詳細
11A
21A
32A
42A
53A
63A
74A
84A
95A
105A
116A
126A
137A
147A
158A
168A
179A
189A
1910A
2010A
2111A
2211A
2312A
2412A
2513A
2613A
2714A
2814A
2915A
3015A
3116A
3216A
3317A
3417A
3518A
3618A
3719A
3819A
3920A
4020A
4121A
4221A
4322A
4422A
4523A
4623A
4724A
4824A
4925A
5025A
5126A
5226A
5327A
5427A
5528A
5628A
5729A
5829A
5930A
6030A
6131A
6231A
6332A
6432A
6533A
6633A
6734A
6834A
6935A
7035A
7136A
7236A
7337A
7437A
7538A
7638A
7739A
7839A
7940A
8040A
8141A
8241A
8342A
8442A
8543A
8643A
8744A
8844A
8945A
9045A
9146A
9246A
9347A
9447A
9548A
9648A
9749A
9849A
9950A
10050A
10151A
10251A
10352A
10452A
10553A
10653A
10754A
10854A
10955A
11055A
11156A
11256A
11357A
11457A
11558A
11658A
11759A
11859A
11960A
12060A
12161A
12261A
12362A
12462A
12563A
12663A
12764A
12864A
12965A
13065A
13166A
13266A
13367A
13467A
13568A
13668A
13769A
13869A
13970A
14070A
14171A
14271A
14372A
14472A
14573A
14673A
14774A
14874A
14975A
15075A
15176A
15276A
15377A
15477A
15578A
15678A
15779A
15879A
15980A
16080A
16181A
16281A
16382A
16482A
16583A
16683A
16784A
16884A
16985A
17085A
17186A
17286A
17387A
17487A
17588A
17688A
17789A
17889A
17990A
18090A
18191A
18291A
18392A
18492A
18593A
18693A
18794A
18894A
18995A
19095A
19196A
19296A
19397A
19497A
19598A
19698A
19799A
19899A
199100A
200100A
201101A
202101A
203102A
204102A
205103A
206103A
207104A
208104A
209105A
210105A
211106A
212106A
213107A
214107A
215108A
216108A
217109A
218109A
219110A
220110A
221111A
222111A
223112A
224112A
225113A
226113A
227114A
228114A
229115A
230115A
231116A
232116A
233117A
234117A
235118A
236118A
237119A
238119A
239120A
240120A
241121A
242121A
243122A
244122A
245123A
246123A
247124A
248124A
249125A
250125A
251126A
252126A
253127A
254127A
255128A
256128A
257129A
258129A
259130A
260130A
261131A
262131A
263132A
264132A

NCSアンサンブル:
ID詳細
1Local NCS retraints between domains: 1 2
2Local NCS retraints between domains: 3 4
3Local NCS retraints between domains: 5 6
4Local NCS retraints between domains: 7 8
5Local NCS retraints between domains: 9 10
6Local NCS retraints between domains: 11 12
7Local NCS retraints between domains: 13 14
8Local NCS retraints between domains: 15 16
9Local NCS retraints between domains: 17 18
10Local NCS retraints between domains: 19 20
11Local NCS retraints between domains: 21 22
12Local NCS retraints between domains: 23 24
13Local NCS retraints between domains: 25 26
14Local NCS retraints between domains: 27 28
15Local NCS retraints between domains: 29 30
16Local NCS retraints between domains: 31 32
17Local NCS retraints between domains: 33 34
18Local NCS retraints between domains: 35 36
19Local NCS retraints between domains: 37 38
20Local NCS retraints between domains: 39 40
21Local NCS retraints between domains: 41 42
22Local NCS retraints between domains: 43 44
23Local NCS retraints between domains: 45 46
24Local NCS retraints between domains: 47 48
25Local NCS retraints between domains: 49 50
26Local NCS retraints between domains: 51 52
27Local NCS retraints between domains: 53 54
28Local NCS retraints between domains: 55 56
29Local NCS retraints between domains: 57 58
30Local NCS retraints between domains: 59 60
31Local NCS retraints between domains: 61 62
32Local NCS retraints between domains: 63 64
33Local NCS retraints between domains: 65 66
34Local NCS retraints between domains: 67 68
35Local NCS retraints between domains: 69 70
36Local NCS retraints between domains: 71 72
37Local NCS retraints between domains: 73 74
38Local NCS retraints between domains: 75 76
39Local NCS retraints between domains: 77 78
40Local NCS retraints between domains: 79 80
41Local NCS retraints between domains: 81 82
42Local NCS retraints between domains: 83 84
43Local NCS retraints between domains: 85 86
44Local NCS retraints between domains: 87 88
45Local NCS retraints between domains: 89 90
46Local NCS retraints between domains: 91 92
47Local NCS retraints between domains: 93 94
48Local NCS retraints between domains: 95 96
49Local NCS retraints between domains: 97 98
50Local NCS retraints between domains: 99 100
51Local NCS retraints between domains: 101 102
52Local NCS retraints between domains: 103 104
53Local NCS retraints between domains: 105 106
54Local NCS retraints between domains: 107 108
55Local NCS retraints between domains: 109 110
56Local NCS retraints between domains: 111 112
57Local NCS retraints between domains: 113 114
58Local NCS retraints between domains: 115 116
59Local NCS retraints between domains: 117 118
60Local NCS retraints between domains: 119 120
61Local NCS retraints between domains: 121 122
62Local NCS retraints between domains: 123 124
63Local NCS retraints between domains: 125 126
64Local NCS retraints between domains: 127 128
65Local NCS retraints between domains: 129 130
66Local NCS retraints between domains: 131 132
67Local NCS retraints between domains: 133 134
68Local NCS retraints between domains: 135 136
69Local NCS retraints between domains: 137 138
70Local NCS retraints between domains: 139 140
71Local NCS retraints between domains: 141 142
72Local NCS retraints between domains: 143 144
73Local NCS retraints between domains: 145 146
74Local NCS retraints between domains: 147 148
75Local NCS retraints between domains: 149 150
76Local NCS retraints between domains: 151 152
77Local NCS retraints between domains: 153 154
78Local NCS retraints between domains: 155 156
79Local NCS retraints between domains: 157 158
80Local NCS retraints between domains: 159 160
81Local NCS retraints between domains: 161 162
82Local NCS retraints between domains: 163 164
83Local NCS retraints between domains: 165 166
84Local NCS retraints between domains: 167 168
85Local NCS retraints between domains: 169 170
86Local NCS retraints between domains: 171 172
87Local NCS retraints between domains: 173 174
88Local NCS retraints between domains: 175 176
89Local NCS retraints between domains: 177 178
90Local NCS retraints between domains: 179 180
91Local NCS retraints between domains: 181 182
92Local NCS retraints between domains: 183 184
93Local NCS retraints between domains: 185 186
94Local NCS retraints between domains: 187 188
95Local NCS retraints between domains: 189 190
96Local NCS retraints between domains: 191 192
97Local NCS retraints between domains: 193 194
98Local NCS retraints between domains: 195 196
99Local NCS retraints between domains: 197 198
100Local NCS retraints between domains: 199 200
101Local NCS retraints between domains: 201 202
102Local NCS retraints between domains: 203 204
103Local NCS retraints between domains: 205 206
104Local NCS retraints between domains: 207 208
105Local NCS retraints between domains: 209 210
106Local NCS retraints between domains: 211 212
107Local NCS retraints between domains: 213 214
108Local NCS retraints between domains: 215 216
109Local NCS retraints between domains: 217 218
110Local NCS retraints between domains: 219 220
111Local NCS retraints between domains: 221 222
112Local NCS retraints between domains: 223 224
113Local NCS retraints between domains: 225 226
114Local NCS retraints between domains: 227 228
115Local NCS retraints between domains: 229 230
116Local NCS retraints between domains: 231 232
117Local NCS retraints between domains: 233 234
118Local NCS retraints between domains: 235 236
119Local NCS retraints between domains: 237 238
120Local NCS retraints between domains: 239 240
121Local NCS retraints between domains: 241 242
122Local NCS retraints between domains: 243 244
123Local NCS retraints between domains: 245 246
124Local NCS retraints between domains: 247 248
125Local NCS retraints between domains: 249 250
126Local NCS retraints between domains: 251 252
127Local NCS retraints between domains: 253 254
128Local NCS retraints between domains: 255 256
129Local NCS retraints between domains: 257 258
130Local NCS retraints between domains: 259 260
131Local NCS retraints between domains: 261 262
132Local NCS retraints between domains: 263 264

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要素

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Phycobilisome rod linker polypeptide ... , 2種, 2分子 AM

#1: タンパク質 Phycobilisome rod linker polypeptide CpcC1


分子量: 31085.066 Da / 分子数: 1 / 由来タイプ: 天然
由来: (天然) Gloeobacter violaceus PCC 7421 (バクテリア)
#4: タンパク質 Phycobilisome rod linker polypeptide CpcC2


分子量: 30913.822 Da / 分子数: 1 / 由来タイプ: 天然
由来: (天然) Gloeobacter violaceus PCC 7421 (バクテリア)

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タンパク質 , 3種, 25分子 BDFHJLOQSUWYCEGIKNPRTVXaZ

#2: タンパク質
Phycocyanin beta chain


分子量: 18478.953 Da / 分子数: 12 / 由来タイプ: 天然
由来: (天然) Gloeobacter violaceus PCC 7421 (バクテリア)
参照: UniProt: Q7M7C7
#3: タンパク質
Phycocyanin alpha chain


分子量: 17679.852 Da / 分子数: 12 / 由来タイプ: 天然
由来: (天然) Gloeobacter violaceus PCC 7421 (バクテリア)
参照: UniProt: Q7M7F7
#5: タンパク質 Glr1262 protein


分子量: 92127.602 Da / 分子数: 1 / 由来タイプ: 天然
由来: (天然) Gloeobacter violaceus PCC 7421 (バクテリア)
参照: UniProt: Q7NL64

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非ポリマー , 1種, 36分子

#6: 化合物...
ChemComp-CYC / PHYCOCYANOBILIN


分子量: 588.694 Da / 分子数: 36 / 由来タイプ: 合成 / : C33H40N4O6 / タイプ: SUBJECT OF INVESTIGATION

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詳細

研究の焦点であるリガンドがあるかY
Has protein modificationY

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実験情報

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実験

実験手法: 電子顕微鏡法
EM実験試料の集合状態: PARTICLE / 3次元再構成法: 単粒子再構成法

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試料調製

構成要素名称: Bundle-shaped phycobilisome / タイプ: COMPLEX / Entity ID: #1-#5 / 由来: NATURAL
由来(天然)生物種: Gloeobacter violaceus PCC 7421 (バクテリア)
緩衝液pH: 7
緩衝液成分濃度: 50 mM / 名称: Tris(hydroxymethyl)aminomethane hydrochloride / : Tris-HCl
試料包埋: NO / シャドウイング: NO / 染色: NO / 凍結: YES
急速凍結凍結剤: ETHANE

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電子顕微鏡撮影

実験機器
モデル: Titan Krios / 画像提供: FEI Company
顕微鏡モデル: TFS KRIOS / 詳細: Preliminary grid screening was performed manually.
電子銃電子線源: FIELD EMISSION GUN / 加速電圧: 300 kV / 照射モード: FLOOD BEAM
電子レンズモード: BRIGHT FIELD / 倍率(公称値): 85000 X / 最大 デフォーカス(公称値): 1600 nm / 最小 デフォーカス(公称値): 600 nm / Cs: 0.01 mm / C2レンズ絞り径: 100 µm / アライメント法: ZEMLIN TABLEAU
試料ホルダ凍結剤: NITROGEN
試料ホルダーモデル: FEI TITAN KRIOS AUTOGRID HOLDER
撮影平均露光時間: 3.9 sec. / 電子線照射量: 66 e/Å2
フィルム・検出器のモデル: GATAN K3 BIOQUANTUM (6k x 4k)
電子光学装置エネルギーフィルター名称: GIF Bioquantum / エネルギーフィルタースリット幅: 20 eV
球面収差補正装置: Microscope was modified with a Cs corrector (CEOS GmbH, Germany).
画像スキャン: 5760 / : 4092

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解析

EMソフトウェア
ID名称バージョンカテゴリ
2SerialEM4.04画像取得
4Warp1.0.9CTF補正
11cryoSPARC4.7最終オイラー角割当
13cryoSPARC4.73次元再構成
CTF補正タイプ: NONE
対称性点対称性: C1 (非対称)
3次元再構成解像度: 3.03 Å / 解像度の算出法: FSC 0.143 CUT-OFF / 粒子像の数: 746972 / 対称性のタイプ: POINT
精密化解像度: 3.03→3.03 Å / Cor.coef. Fo:Fc: 0.964 / WRfactor Rwork: 0.328 / SU B: 35.894 / SU ML: 0.582 / Average fsc free: 0 / Average fsc overall: 0.7546 / Average fsc work: 0.7546 / ESU R: 0.824 / 詳細: Hydrogens have been added in their riding positions
Rfactor反射数%反射
Rwork0.3276 202863 -
all0.328 --
Rfree--0 %
obs--100 %
溶媒の処理溶媒モデル: NONE
原子変位パラメータBiso mean: 55.44 Å2
拘束条件
Refine-IDタイプDev idealDev ideal target
ELECTRON MICROSCOPYr_bond_refined_d0.0070.01237105
ELECTRON MICROSCOPYr_bond_other_d0.0010.01635189
ELECTRON MICROSCOPYr_angle_refined_deg1.6451.81550490
ELECTRON MICROSCOPYr_angle_other_deg0.6361.74980506
ELECTRON MICROSCOPYr_dihedral_angle_1_deg6.1854540
ELECTRON MICROSCOPYr_dihedral_angle_2_deg16.2788.522920
ELECTRON MICROSCOPYr_dihedral_angle_3_deg17.249105935
ELECTRON MICROSCOPYr_dihedral_angle_6_deg13.904101611
ELECTRON MICROSCOPYr_chiral_restr0.0690.25598
ELECTRON MICROSCOPYr_gen_planes_refined0.0070.0245915
ELECTRON MICROSCOPYr_gen_planes_other0.0040.028591
ELECTRON MICROSCOPYr_nbd_refined0.3120.211608
ELECTRON MICROSCOPYr_symmetry_nbd_other0.2230.234503
ELECTRON MICROSCOPYr_nbtor_refined0.2040.219829
ELECTRON MICROSCOPYr_symmetry_nbtor_other0.0830.220460
ELECTRON MICROSCOPYr_xyhbond_nbd_refined0.1730.21274
ELECTRON MICROSCOPYr_symmetry_xyhbond_nbd_other0.0990.245
ELECTRON MICROSCOPYr_mcbond_it1.4095.60418241
ELECTRON MICROSCOPYr_mcbond_other1.4095.60418241
ELECTRON MICROSCOPYr_mcangle_it2.42810.05422754
ELECTRON MICROSCOPYr_mcangle_other2.42810.05422755
ELECTRON MICROSCOPYr_scbond_it1.335.59418864
ELECTRON MICROSCOPYr_scbond_other1.335.59418863
ELECTRON MICROSCOPYr_scangle_it2.42810.26127736
ELECTRON MICROSCOPYr_scangle_other2.42810.26127737
ELECTRON MICROSCOPYr_lrange_it4.35150.58546873
ELECTRON MICROSCOPYr_lrange_other4.35150.58546874
ELECTRON MICROSCOPYr_ncsr_local_group_10.1090.055276
ELECTRON MICROSCOPYr_ncsr_local_group_20.0790.055355
ELECTRON MICROSCOPYr_ncsr_local_group_30.0710.055430
ELECTRON MICROSCOPYr_ncsr_local_group_40.080.055375
ELECTRON MICROSCOPYr_ncsr_local_group_50.10.055307
ELECTRON MICROSCOPYr_ncsr_local_group_60.0470.055499
ELECTRON MICROSCOPYr_ncsr_local_group_70.0830.055387
ELECTRON MICROSCOPYr_ncsr_local_group_80.0810.055349
ELECTRON MICROSCOPYr_ncsr_local_group_90.0710.055427
ELECTRON MICROSCOPYr_ncsr_local_group_100.080.055376
ELECTRON MICROSCOPYr_ncsr_local_group_110.1010.055286
ELECTRON MICROSCOPYr_ncsr_local_group_120.0630.055247
ELECTRON MICROSCOPYr_ncsr_local_group_130.0660.055272
ELECTRON MICROSCOPYr_ncsr_local_group_140.0830.055224
ELECTRON MICROSCOPYr_ncsr_local_group_150.0690.055251
ELECTRON MICROSCOPYr_ncsr_local_group_160.0910.055217
ELECTRON MICROSCOPYr_ncsr_local_group_170.0610.055290
ELECTRON MICROSCOPYr_ncsr_local_group_180.0620.055248
ELECTRON MICROSCOPYr_ncsr_local_group_190.0630.055286
ELECTRON MICROSCOPYr_ncsr_local_group_200.0870.055221
ELECTRON MICROSCOPYr_ncsr_local_group_210.0580.055272
ELECTRON MICROSCOPYr_ncsr_local_group_220.090.055232
ELECTRON MICROSCOPYr_ncsr_local_group_230.1050.055244
ELECTRON MICROSCOPYr_ncsr_local_group_240.1060.055313
ELECTRON MICROSCOPYr_ncsr_local_group_250.1120.055261
ELECTRON MICROSCOPYr_ncsr_local_group_260.1120.055283
ELECTRON MICROSCOPYr_ncsr_local_group_270.1180.055258
ELECTRON MICROSCOPYr_ncsr_local_group_280.0810.055438
ELECTRON MICROSCOPYr_ncsr_local_group_290.1040.055261
ELECTRON MICROSCOPYr_ncsr_local_group_300.1050.055313
ELECTRON MICROSCOPYr_ncsr_local_group_310.1120.055262
ELECTRON MICROSCOPYr_ncsr_local_group_320.1090.055282
ELECTRON MICROSCOPYr_ncsr_local_group_330.0640.055280
ELECTRON MICROSCOPYr_ncsr_local_group_340.0780.055225
ELECTRON MICROSCOPYr_ncsr_local_group_350.060.055300
ELECTRON MICROSCOPYr_ncsr_local_group_360.0850.055243
ELECTRON MICROSCOPYr_ncsr_local_group_370.0780.055219
ELECTRON MICROSCOPYr_ncsr_local_group_380.0120.055374
ELECTRON MICROSCOPYr_ncsr_local_group_390.060.055290
ELECTRON MICROSCOPYr_ncsr_local_group_400.0830.055222
ELECTRON MICROSCOPYr_ncsr_local_group_410.0520.055299
ELECTRON MICROSCOPYr_ncsr_local_group_420.0860.055241
ELECTRON MICROSCOPYr_ncsr_local_group_430.0730.055395
ELECTRON MICROSCOPYr_ncsr_local_group_440.0680.055380
ELECTRON MICROSCOPYr_ncsr_local_group_450.0990.055295
ELECTRON MICROSCOPYr_ncsr_local_group_460.0870.055344
ELECTRON MICROSCOPYr_ncsr_local_group_470.080.055344
ELECTRON MICROSCOPYr_ncsr_local_group_480.0290.055480
ELECTRON MICROSCOPYr_ncsr_local_group_490.0720.055395
ELECTRON MICROSCOPYr_ncsr_local_group_500.0690.055381
ELECTRON MICROSCOPYr_ncsr_local_group_510.0990.055304
ELECTRON MICROSCOPYr_ncsr_local_group_520.0880.055218
ELECTRON MICROSCOPYr_ncsr_local_group_530.0670.055276
ELECTRON MICROSCOPYr_ncsr_local_group_540.0870.055228
ELECTRON MICROSCOPYr_ncsr_local_group_550.0820.055239
ELECTRON MICROSCOPYr_ncsr_local_group_560.0620.055284
ELECTRON MICROSCOPYr_ncsr_local_group_570.0310.055354
ELECTRON MICROSCOPYr_ncsr_local_group_580.090.055226
ELECTRON MICROSCOPYr_ncsr_local_group_590.0560.055289
ELECTRON MICROSCOPYr_ncsr_local_group_600.0870.055243
ELECTRON MICROSCOPYr_ncsr_local_group_610.0760.055413
ELECTRON MICROSCOPYr_ncsr_local_group_620.10.055333
ELECTRON MICROSCOPYr_ncsr_local_group_630.0790.055395
ELECTRON MICROSCOPYr_ncsr_local_group_640.0820.055426
ELECTRON MICROSCOPYr_ncsr_local_group_650.0750.055382
ELECTRON MICROSCOPYr_ncsr_local_group_660.0060.055575
ELECTRON MICROSCOPYr_ncsr_local_group_670.0750.055411
ELECTRON MICROSCOPYr_ncsr_local_group_680.1010.055336
ELECTRON MICROSCOPYr_ncsr_local_group_690.090.055219
ELECTRON MICROSCOPYr_ncsr_local_group_700.0950.055206
ELECTRON MICROSCOPYr_ncsr_local_group_710.0960.055185
ELECTRON MICROSCOPYr_ncsr_local_group_720.0770.055224
ELECTRON MICROSCOPYr_ncsr_local_group_730.0850.055231
ELECTRON MICROSCOPYr_ncsr_local_group_740.0520.055334
ELECTRON MICROSCOPYr_ncsr_local_group_750.0830.055233
ELECTRON MICROSCOPYr_ncsr_local_group_760.0950.055201
ELECTRON MICROSCOPYr_ncsr_local_group_770.1020.055332
ELECTRON MICROSCOPYr_ncsr_local_group_780.0880.055341
ELECTRON MICROSCOPYr_ncsr_local_group_790.0890.055384
ELECTRON MICROSCOPYr_ncsr_local_group_800.0740.055364
ELECTRON MICROSCOPYr_ncsr_local_group_810.0760.055412
ELECTRON MICROSCOPYr_ncsr_local_group_820.0060.055563
ELECTRON MICROSCOPYr_ncsr_local_group_830.0990.055337
ELECTRON MICROSCOPYr_ncsr_local_group_840.0910.055227
ELECTRON MICROSCOPYr_ncsr_local_group_850.0630.055292
ELECTRON MICROSCOPYr_ncsr_local_group_860.060.055299
ELECTRON MICROSCOPYr_ncsr_local_group_870.0640.055291
ELECTRON MICROSCOPYr_ncsr_local_group_880.0930.055221
ELECTRON MICROSCOPYr_ncsr_local_group_890.040.055355
ELECTRON MICROSCOPYr_ncsr_local_group_900.0910.055240
ELECTRON MICROSCOPYr_ncsr_local_group_910.1060.055303
ELECTRON MICROSCOPYr_ncsr_local_group_920.0940.055361
ELECTRON MICROSCOPYr_ncsr_local_group_930.1010.055286
ELECTRON MICROSCOPYr_ncsr_local_group_940.0990.055335
ELECTRON MICROSCOPYr_ncsr_local_group_950.1020.055338
ELECTRON MICROSCOPYr_ncsr_local_group_960.070.055432
ELECTRON MICROSCOPYr_ncsr_local_group_970.0990.055198
ELECTRON MICROSCOPYr_ncsr_local_group_980.0840.055241
ELECTRON MICROSCOPYr_ncsr_local_group_990.0860.055234
ELECTRON MICROSCOPYr_ncsr_local_group_1000.0980.055203
ELECTRON MICROSCOPYr_ncsr_local_group_1010.0870.055226
ELECTRON MICROSCOPYr_ncsr_local_group_1020.020.055380
ELECTRON MICROSCOPYr_ncsr_local_group_1030.0930.055353
ELECTRON MICROSCOPYr_ncsr_local_group_1040.0880.055344
ELECTRON MICROSCOPYr_ncsr_local_group_1050.0790.055396
ELECTRON MICROSCOPYr_ncsr_local_group_1060.0870.055342
ELECTRON MICROSCOPYr_ncsr_local_group_1070.1110.055260
ELECTRON MICROSCOPYr_ncsr_local_group_1080.0780.055224
ELECTRON MICROSCOPYr_ncsr_local_group_1090.080.055240
ELECTRON MICROSCOPYr_ncsr_local_group_1100.0830.055263
ELECTRON MICROSCOPYr_ncsr_local_group_1110.0740.055234
ELECTRON MICROSCOPYr_ncsr_local_group_1120.0990.055202
ELECTRON MICROSCOPYr_ncsr_local_group_1130.0810.055346
ELECTRON MICROSCOPYr_ncsr_local_group_1140.0820.055431
ELECTRON MICROSCOPYr_ncsr_local_group_1150.0890.055386
ELECTRON MICROSCOPYr_ncsr_local_group_1160.0920.055371
ELECTRON MICROSCOPYr_ncsr_local_group_1170.0590.055292
ELECTRON MICROSCOPYr_ncsr_local_group_1180.0810.055227
ELECTRON MICROSCOPYr_ncsr_local_group_1190.0520.055299
ELECTRON MICROSCOPYr_ncsr_local_group_1200.0840.055244
ELECTRON MICROSCOPYr_ncsr_local_group_1210.0750.055383
ELECTRON MICROSCOPYr_ncsr_local_group_1220.0740.055364
ELECTRON MICROSCOPYr_ncsr_local_group_1230.10.055284
ELECTRON MICROSCOPYr_ncsr_local_group_1240.0890.055228
ELECTRON MICROSCOPYr_ncsr_local_group_1250.0540.055309
ELECTRON MICROSCOPYr_ncsr_local_group_1260.0850.055254
ELECTRON MICROSCOPYr_ncsr_local_group_1270.0750.055414
ELECTRON MICROSCOPYr_ncsr_local_group_1280.10.055346
ELECTRON MICROSCOPYr_ncsr_local_group_1290.0850.055234
ELECTRON MICROSCOPYr_ncsr_local_group_1300.0990.055202
ELECTRON MICROSCOPYr_ncsr_local_group_1310.0990.055339
ELECTRON MICROSCOPYr_ncsr_local_group_1320.0870.055244
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-IDRefine-IDタイプRms dev position (Å)Weight position
11AELECTRON MICROSCOPYLocal ncs0.109420.05008
12AELECTRON MICROSCOPYLocal ncs0.109420.05008
23AELECTRON MICROSCOPYLocal ncs0.079020.05009
24AELECTRON MICROSCOPYLocal ncs0.079020.05009
35AELECTRON MICROSCOPYLocal ncs0.071160.05009
36AELECTRON MICROSCOPYLocal ncs0.071160.05009
47AELECTRON MICROSCOPYLocal ncs0.080270.05009
48AELECTRON MICROSCOPYLocal ncs0.080270.05009
59AELECTRON MICROSCOPYLocal ncs0.099980.05008
510AELECTRON MICROSCOPYLocal ncs0.099980.05008
611AELECTRON MICROSCOPYLocal ncs0.046890.05009
612AELECTRON MICROSCOPYLocal ncs0.046890.05009
713AELECTRON MICROSCOPYLocal ncs0.083060.05009
714AELECTRON MICROSCOPYLocal ncs0.083060.05009
815AELECTRON MICROSCOPYLocal ncs0.080670.05009
816AELECTRON MICROSCOPYLocal ncs0.080670.05009
917AELECTRON MICROSCOPYLocal ncs0.071270.05009
918AELECTRON MICROSCOPYLocal ncs0.071270.05009
1019AELECTRON MICROSCOPYLocal ncs0.080020.05009
1020AELECTRON MICROSCOPYLocal ncs0.080020.05009
1121AELECTRON MICROSCOPYLocal ncs0.101330.05008
1122AELECTRON MICROSCOPYLocal ncs0.101330.05008
1223AELECTRON MICROSCOPYLocal ncs0.06350.05009
1224AELECTRON MICROSCOPYLocal ncs0.06350.05009
1325AELECTRON MICROSCOPYLocal ncs0.065860.0501
1326AELECTRON MICROSCOPYLocal ncs0.065860.0501
1427AELECTRON MICROSCOPYLocal ncs0.082570.05009
1428AELECTRON MICROSCOPYLocal ncs0.082570.05009
1529AELECTRON MICROSCOPYLocal ncs0.068530.05009
1530AELECTRON MICROSCOPYLocal ncs0.068530.05009
1631AELECTRON MICROSCOPYLocal ncs0.091190.05009
1632AELECTRON MICROSCOPYLocal ncs0.091190.05009
1733AELECTRON MICROSCOPYLocal ncs0.060870.05009
1734AELECTRON MICROSCOPYLocal ncs0.060870.05009
1835AELECTRON MICROSCOPYLocal ncs0.061950.05009
1836AELECTRON MICROSCOPYLocal ncs0.061950.05009
1937AELECTRON MICROSCOPYLocal ncs0.062710.0501
1938AELECTRON MICROSCOPYLocal ncs0.062710.0501
2039AELECTRON MICROSCOPYLocal ncs0.086790.05009
2040AELECTRON MICROSCOPYLocal ncs0.086790.05009
2141AELECTRON MICROSCOPYLocal ncs0.05790.0501
2142AELECTRON MICROSCOPYLocal ncs0.05790.0501
2243AELECTRON MICROSCOPYLocal ncs0.090290.05009
2244AELECTRON MICROSCOPYLocal ncs0.090290.05009
2345AELECTRON MICROSCOPYLocal ncs0.10520.05008
2346AELECTRON MICROSCOPYLocal ncs0.10520.05008
2447AELECTRON MICROSCOPYLocal ncs0.105750.05008
2448AELECTRON MICROSCOPYLocal ncs0.105750.05008
2549AELECTRON MICROSCOPYLocal ncs0.111690.05008
2550AELECTRON MICROSCOPYLocal ncs0.111690.05008
2651AELECTRON MICROSCOPYLocal ncs0.112030.05008
2652AELECTRON MICROSCOPYLocal ncs0.112030.05008
2753AELECTRON MICROSCOPYLocal ncs0.117790.05007
2754AELECTRON MICROSCOPYLocal ncs0.117790.05007
2855AELECTRON MICROSCOPYLocal ncs0.081130.05008
2856AELECTRON MICROSCOPYLocal ncs0.081130.05008
2957AELECTRON MICROSCOPYLocal ncs0.103750.05008
2958AELECTRON MICROSCOPYLocal ncs0.103750.05008
3059AELECTRON MICROSCOPYLocal ncs0.105030.05008
3060AELECTRON MICROSCOPYLocal ncs0.105030.05008
3161AELECTRON MICROSCOPYLocal ncs0.111930.05008
3162AELECTRON MICROSCOPYLocal ncs0.111930.05008
3263AELECTRON MICROSCOPYLocal ncs0.108720.05008
3264AELECTRON MICROSCOPYLocal ncs0.108720.05008
3365AELECTRON MICROSCOPYLocal ncs0.064310.0501
3366AELECTRON MICROSCOPYLocal ncs0.064310.0501
3467AELECTRON MICROSCOPYLocal ncs0.078010.05009
3468AELECTRON MICROSCOPYLocal ncs0.078010.05009
3569AELECTRON MICROSCOPYLocal ncs0.060240.05009
3570AELECTRON MICROSCOPYLocal ncs0.060240.05009
3671AELECTRON MICROSCOPYLocal ncs0.085470.0501
3672AELECTRON MICROSCOPYLocal ncs0.085470.0501
3773AELECTRON MICROSCOPYLocal ncs0.078410.05009
3774AELECTRON MICROSCOPYLocal ncs0.078410.05009
3875AELECTRON MICROSCOPYLocal ncs0.012320.0501
3876AELECTRON MICROSCOPYLocal ncs0.012320.0501
3977AELECTRON MICROSCOPYLocal ncs0.05990.0501
3978AELECTRON MICROSCOPYLocal ncs0.05990.0501
4079AELECTRON MICROSCOPYLocal ncs0.082550.05009
4080AELECTRON MICROSCOPYLocal ncs0.082550.05009
4181AELECTRON MICROSCOPYLocal ncs0.052090.0501
4182AELECTRON MICROSCOPYLocal ncs0.052090.0501
4283AELECTRON MICROSCOPYLocal ncs0.085990.0501
4284AELECTRON MICROSCOPYLocal ncs0.085990.0501
4385AELECTRON MICROSCOPYLocal ncs0.072510.05009
4386AELECTRON MICROSCOPYLocal ncs0.072510.05009
4487AELECTRON MICROSCOPYLocal ncs0.068290.05009
4488AELECTRON MICROSCOPYLocal ncs0.068290.05009
4589AELECTRON MICROSCOPYLocal ncs0.098830.05008
4590AELECTRON MICROSCOPYLocal ncs0.098830.05008
4691AELECTRON MICROSCOPYLocal ncs0.087150.05009
4692AELECTRON MICROSCOPYLocal ncs0.087150.05009
4793AELECTRON MICROSCOPYLocal ncs0.08030.05009
4794AELECTRON MICROSCOPYLocal ncs0.08030.05009
4895AELECTRON MICROSCOPYLocal ncs0.02950.05009
4896AELECTRON MICROSCOPYLocal ncs0.02950.05009
4997AELECTRON MICROSCOPYLocal ncs0.072420.05009
4998AELECTRON MICROSCOPYLocal ncs0.072420.05009
5099AELECTRON MICROSCOPYLocal ncs0.069310.05009
50100AELECTRON MICROSCOPYLocal ncs0.069310.05009
51101AELECTRON MICROSCOPYLocal ncs0.099460.05009
51102AELECTRON MICROSCOPYLocal ncs0.099460.05009
52103AELECTRON MICROSCOPYLocal ncs0.088150.05009
52104AELECTRON MICROSCOPYLocal ncs0.088150.05009
53105AELECTRON MICROSCOPYLocal ncs0.067020.05009
53106AELECTRON MICROSCOPYLocal ncs0.067020.05009
54107AELECTRON MICROSCOPYLocal ncs0.087280.05009
54108AELECTRON MICROSCOPYLocal ncs0.087280.05009
55109AELECTRON MICROSCOPYLocal ncs0.082480.05009
55110AELECTRON MICROSCOPYLocal ncs0.082480.05009
56111AELECTRON MICROSCOPYLocal ncs0.06160.0501
56112AELECTRON MICROSCOPYLocal ncs0.06160.0501
57113AELECTRON MICROSCOPYLocal ncs0.030550.0501
57114AELECTRON MICROSCOPYLocal ncs0.030550.0501
58115AELECTRON MICROSCOPYLocal ncs0.08970.05009
58116AELECTRON MICROSCOPYLocal ncs0.08970.05009
59117AELECTRON MICROSCOPYLocal ncs0.056470.0501
59118AELECTRON MICROSCOPYLocal ncs0.056470.0501
60119AELECTRON MICROSCOPYLocal ncs0.086920.0501
60120AELECTRON MICROSCOPYLocal ncs0.086920.0501
61121AELECTRON MICROSCOPYLocal ncs0.075550.05009
61122AELECTRON MICROSCOPYLocal ncs0.075550.05009
62123AELECTRON MICROSCOPYLocal ncs0.100090.05009
62124AELECTRON MICROSCOPYLocal ncs0.100090.05009
63125AELECTRON MICROSCOPYLocal ncs0.079280.05009
63126AELECTRON MICROSCOPYLocal ncs0.079280.05009
64127AELECTRON MICROSCOPYLocal ncs0.082080.05009
64128AELECTRON MICROSCOPYLocal ncs0.082080.05009
65129AELECTRON MICROSCOPYLocal ncs0.074620.05009
65130AELECTRON MICROSCOPYLocal ncs0.074620.05009
66131AELECTRON MICROSCOPYLocal ncs0.005890.0501
66132AELECTRON MICROSCOPYLocal ncs0.005890.0501
67133AELECTRON MICROSCOPYLocal ncs0.075360.05009
67134AELECTRON MICROSCOPYLocal ncs0.075360.05009
68135AELECTRON MICROSCOPYLocal ncs0.10140.05009
68136AELECTRON MICROSCOPYLocal ncs0.10140.05009
69137AELECTRON MICROSCOPYLocal ncs0.090230.05009
69138AELECTRON MICROSCOPYLocal ncs0.090230.05009
70139AELECTRON MICROSCOPYLocal ncs0.094770.05009
70140AELECTRON MICROSCOPYLocal ncs0.094770.05009
71141AELECTRON MICROSCOPYLocal ncs0.095890.05009
71142AELECTRON MICROSCOPYLocal ncs0.095890.05009
72143AELECTRON MICROSCOPYLocal ncs0.077230.05009
72144AELECTRON MICROSCOPYLocal ncs0.077230.05009
73145AELECTRON MICROSCOPYLocal ncs0.085480.05009
73146AELECTRON MICROSCOPYLocal ncs0.085480.05009
74147AELECTRON MICROSCOPYLocal ncs0.052480.0501
74148AELECTRON MICROSCOPYLocal ncs0.052480.0501
75149AELECTRON MICROSCOPYLocal ncs0.082550.05009
75150AELECTRON MICROSCOPYLocal ncs0.082550.05009
76151AELECTRON MICROSCOPYLocal ncs0.095290.05009
76152AELECTRON MICROSCOPYLocal ncs0.095290.05009
77153AELECTRON MICROSCOPYLocal ncs0.102360.05008
77154AELECTRON MICROSCOPYLocal ncs0.102360.05008
78155AELECTRON MICROSCOPYLocal ncs0.087650.05009
78156AELECTRON MICROSCOPYLocal ncs0.087650.05009
79157AELECTRON MICROSCOPYLocal ncs0.08880.05009
79158AELECTRON MICROSCOPYLocal ncs0.08880.05009
80159AELECTRON MICROSCOPYLocal ncs0.073530.05009
80160AELECTRON MICROSCOPYLocal ncs0.073530.05009
81161AELECTRON MICROSCOPYLocal ncs0.075660.05009
81162AELECTRON MICROSCOPYLocal ncs0.075660.05009
82163AELECTRON MICROSCOPYLocal ncs0.005690.0501
82164AELECTRON MICROSCOPYLocal ncs0.005690.0501
83165AELECTRON MICROSCOPYLocal ncs0.099120.05009
83166AELECTRON MICROSCOPYLocal ncs0.099120.05009
84167AELECTRON MICROSCOPYLocal ncs0.091330.05009
84168AELECTRON MICROSCOPYLocal ncs0.091330.05009
85169AELECTRON MICROSCOPYLocal ncs0.063270.0501
85170AELECTRON MICROSCOPYLocal ncs0.063270.0501
86171AELECTRON MICROSCOPYLocal ncs0.060290.05009
86172AELECTRON MICROSCOPYLocal ncs0.060290.05009
87173AELECTRON MICROSCOPYLocal ncs0.064130.05009
87174AELECTRON MICROSCOPYLocal ncs0.064130.05009
88175AELECTRON MICROSCOPYLocal ncs0.093290.05009
88176AELECTRON MICROSCOPYLocal ncs0.093290.05009
89177AELECTRON MICROSCOPYLocal ncs0.040190.0501
89178AELECTRON MICROSCOPYLocal ncs0.040190.0501
90179AELECTRON MICROSCOPYLocal ncs0.090870.05009
90180AELECTRON MICROSCOPYLocal ncs0.090870.05009
91181AELECTRON MICROSCOPYLocal ncs0.105960.05008
91182AELECTRON MICROSCOPYLocal ncs0.105960.05008
92183AELECTRON MICROSCOPYLocal ncs0.094070.05009
92184AELECTRON MICROSCOPYLocal ncs0.094070.05009
93185AELECTRON MICROSCOPYLocal ncs0.101210.05008
93186AELECTRON MICROSCOPYLocal ncs0.101210.05008
94187AELECTRON MICROSCOPYLocal ncs0.099490.05009
94188AELECTRON MICROSCOPYLocal ncs0.099490.05009
95189AELECTRON MICROSCOPYLocal ncs0.102260.05009
95190AELECTRON MICROSCOPYLocal ncs0.102260.05009
96191AELECTRON MICROSCOPYLocal ncs0.070380.05009
96192AELECTRON MICROSCOPYLocal ncs0.070380.05009
97193AELECTRON MICROSCOPYLocal ncs0.099220.05009
97194AELECTRON MICROSCOPYLocal ncs0.099220.05009
98195AELECTRON MICROSCOPYLocal ncs0.083550.0501
98196AELECTRON MICROSCOPYLocal ncs0.083550.0501
99197AELECTRON MICROSCOPYLocal ncs0.085890.05009
99198AELECTRON MICROSCOPYLocal ncs0.085890.05009
100199AELECTRON MICROSCOPYLocal ncs0.098370.05009
100200AELECTRON MICROSCOPYLocal ncs0.098370.05009
101201AELECTRON MICROSCOPYLocal ncs0.087250.05009
101202AELECTRON MICROSCOPYLocal ncs0.087250.05009
102203AELECTRON MICROSCOPYLocal ncs0.02040.0501
102204AELECTRON MICROSCOPYLocal ncs0.02040.0501
103205AELECTRON MICROSCOPYLocal ncs0.093080.05009
103206AELECTRON MICROSCOPYLocal ncs0.093080.05009
104207AELECTRON MICROSCOPYLocal ncs0.088440.05008
104208AELECTRON MICROSCOPYLocal ncs0.088440.05008
105209AELECTRON MICROSCOPYLocal ncs0.079440.05009
105210AELECTRON MICROSCOPYLocal ncs0.079440.05009
106211AELECTRON MICROSCOPYLocal ncs0.087380.05009
106212AELECTRON MICROSCOPYLocal ncs0.087380.05009
107213AELECTRON MICROSCOPYLocal ncs0.110760.05008
107214AELECTRON MICROSCOPYLocal ncs0.110760.05008
108215AELECTRON MICROSCOPYLocal ncs0.077860.05009
108216AELECTRON MICROSCOPYLocal ncs0.077860.05009
109217AELECTRON MICROSCOPYLocal ncs0.080130.05009
109218AELECTRON MICROSCOPYLocal ncs0.080130.05009
110219AELECTRON MICROSCOPYLocal ncs0.083250.05009
110220AELECTRON MICROSCOPYLocal ncs0.083250.05009
111221AELECTRON MICROSCOPYLocal ncs0.074170.05009
111222AELECTRON MICROSCOPYLocal ncs0.074170.05009
112223AELECTRON MICROSCOPYLocal ncs0.098930.05009
112224AELECTRON MICROSCOPYLocal ncs0.098930.05009
113225AELECTRON MICROSCOPYLocal ncs0.081290.05009
113226AELECTRON MICROSCOPYLocal ncs0.081290.05009
114227AELECTRON MICROSCOPYLocal ncs0.081920.05009
114228AELECTRON MICROSCOPYLocal ncs0.081920.05009
115229AELECTRON MICROSCOPYLocal ncs0.088720.05009
115230AELECTRON MICROSCOPYLocal ncs0.088720.05009
116231AELECTRON MICROSCOPYLocal ncs0.091820.05009
116232AELECTRON MICROSCOPYLocal ncs0.091820.05009
117233AELECTRON MICROSCOPYLocal ncs0.058550.0501
117234AELECTRON MICROSCOPYLocal ncs0.058550.0501
118235AELECTRON MICROSCOPYLocal ncs0.08110.0501
118236AELECTRON MICROSCOPYLocal ncs0.08110.0501
119237AELECTRON MICROSCOPYLocal ncs0.05180.0501
119238AELECTRON MICROSCOPYLocal ncs0.05180.0501
120239AELECTRON MICROSCOPYLocal ncs0.083640.0501
120240AELECTRON MICROSCOPYLocal ncs0.083640.0501
121241AELECTRON MICROSCOPYLocal ncs0.074610.05009
121242AELECTRON MICROSCOPYLocal ncs0.074610.05009
122243AELECTRON MICROSCOPYLocal ncs0.073640.05009
122244AELECTRON MICROSCOPYLocal ncs0.073640.05009
123245AELECTRON MICROSCOPYLocal ncs0.099570.05008
123246AELECTRON MICROSCOPYLocal ncs0.099570.05008
124247AELECTRON MICROSCOPYLocal ncs0.089180.0501
124248AELECTRON MICROSCOPYLocal ncs0.089180.0501
125249AELECTRON MICROSCOPYLocal ncs0.05380.0501
125250AELECTRON MICROSCOPYLocal ncs0.05380.0501
126251AELECTRON MICROSCOPYLocal ncs0.085250.0501
126252AELECTRON MICROSCOPYLocal ncs0.085250.0501
127253AELECTRON MICROSCOPYLocal ncs0.075380.05009
127254AELECTRON MICROSCOPYLocal ncs0.075380.05009
128255AELECTRON MICROSCOPYLocal ncs0.100080.05009
128256AELECTRON MICROSCOPYLocal ncs0.100080.05009
129257AELECTRON MICROSCOPYLocal ncs0.084720.05009
129258AELECTRON MICROSCOPYLocal ncs0.084720.05009
130259AELECTRON MICROSCOPYLocal ncs0.099350.05009
130260AELECTRON MICROSCOPYLocal ncs0.099350.05009
131261AELECTRON MICROSCOPYLocal ncs0.098830.05009
131262AELECTRON MICROSCOPYLocal ncs0.098830.05009
132263AELECTRON MICROSCOPYLocal ncs0.087240.05009
132264AELECTRON MICROSCOPYLocal ncs0.087240.05009
LS精密化 シェル

Refine-ID: ELECTRON MICROSCOPY / Num. reflection Rfree: _ / Total num. of bins used: 20 / % reflection obs: 100 %

解像度 (Å)Rfactor RworkNum. reflection RworkRfactor allNum. reflection allFsc workWRfactor Rwork
3.15-3.2320.557151320.557151320.4820.557
3.232-3.320.462145380.462145380.5750.462
3.32-3.4170.44142010.44142010.6310.44
3.417-3.5220.429138630.429138630.6590.429
3.522-3.6370.414134190.414134190.6990.414
3.637-3.7650.397129380.397129380.740.397
3.765-3.9070.383124480.383124480.7730.383
3.907-4.0660.368120800.368120800.7930.368
4.066-4.2470.353114570.353114570.8180.353
4.247-4.4540.342110480.342110480.8310.342
4.454-4.6950.323104880.323104880.8490.323
4.695-4.9790.31698690.31698690.8530.316
4.979-5.3220.32293740.32293740.8550.322
5.322-5.7480.35686650.35686650.8540.356
5.748-6.2960.38379360.38379360.8490.383
6.296-7.0380.34472430.34472430.8720.344
7.038-8.1240.28363540.28363540.8890.283
8.124-9.9430.24553620.24553620.9270.245
9.943-14.0320.23841820.23841820.9490.238
14.032-154.8230.18422690.18422690.9850.184

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万見について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月:コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか? / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例:em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る