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基本情報
登録情報 | データベース: PDB / ID: 7ljc | |||||||||||||||
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タイトル | Allosteric modulator LY3154207 binding to SKF-81297-bound dopamine receptor 1 in complex with miniGs protein | |||||||||||||||
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![]() | SIGNALING PROTEIN / Dopamine receptor 2 / Gs protein / SKF-81297 / PAM / LY3154207 | |||||||||||||||
機能・相同性 | ![]() dopamine neurotransmitter receptor activity / dopamine neurotransmitter receptor activity, coupled via Gs / cerebral cortex GABAergic interneuron migration / Dopamine receptors / operant conditioning / regulation of dopamine uptake involved in synaptic transmission / dopamine binding / modification of postsynaptic structure / heterotrimeric G-protein binding / regulation of dopamine metabolic process ...dopamine neurotransmitter receptor activity / dopamine neurotransmitter receptor activity, coupled via Gs / cerebral cortex GABAergic interneuron migration / Dopamine receptors / operant conditioning / regulation of dopamine uptake involved in synaptic transmission / dopamine binding / modification of postsynaptic structure / heterotrimeric G-protein binding / regulation of dopamine metabolic process / peristalsis / G protein-coupled receptor complex / phospholipase C-activating dopamine receptor signaling pathway / sensitization / dopamine transport / grooming behavior / positive regulation of neuron migration / habituation / astrocyte development / positive regulation of potassium ion transport / striatum development / conditioned taste aversion / dentate gyrus development / maternal behavior / G-protein activation / Activation of the phototransduction cascade / Glucagon-type ligand receptors / Thromboxane signalling through TP receptor / Sensory perception of sweet, bitter, and umami (glutamate) taste / G beta:gamma signalling through PI3Kgamma / G beta:gamma signalling through CDC42 / Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding / Activation of G protein gated Potassium channels / Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits / Ca2+ pathway / arrestin family protein binding / G alpha (z) signalling events / Vasopressin regulates renal water homeostasis via Aquaporins / Glucagon-like Peptide-1 (GLP1) regulates insulin secretion / non-motile cilium / Adrenaline,noradrenaline inhibits insulin secretion / ADP signalling through P2Y purinoceptor 12 / G alpha (q) signalling events / adult walking behavior / Thrombin signalling through proteinase activated receptors (PARs) / G alpha (i) signalling events / Activation of G protein gated Potassium channels / G-protein activation / G beta:gamma signalling through PI3Kgamma / Prostacyclin signalling through prostacyclin receptor / G beta:gamma signalling through PLC beta / ADP signalling through P2Y purinoceptor 1 / Thromboxane signalling through TP receptor / Presynaptic function of Kainate receptors / G beta:gamma signalling through CDC42 / Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits / Glucagon-type ligand receptors / Adrenaline,noradrenaline inhibits insulin secretion / G alpha (12/13) signalling events / G beta:gamma signalling through BTK / ADP signalling through P2Y purinoceptor 12 / alkylglycerophosphoethanolamine phosphodiesterase activity / mating behavior / Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding / long-term synaptic depression / Thrombin signalling through proteinase activated receptors (PARs) / Ca2+ pathway / G alpha (z) signalling events / Extra-nuclear estrogen signaling / G alpha (s) signalling events / ciliary membrane / G alpha (q) signalling events / G protein-coupled dopamine receptor signaling pathway / photoreceptor outer segment membrane / G alpha (i) signalling events / Glucagon-like Peptide-1 (GLP1) regulates insulin secretion / temperature homeostasis / spectrin binding / Vasopressin regulates renal water homeostasis via Aquaporins / dopamine metabolic process / transmission of nerve impulse / glucose import / PKA activation in glucagon signalling / behavioral response to cocaine / G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger / hair follicle placode formation / neuronal action potential / mu-type opioid receptor binding / corticotropin-releasing hormone receptor 1 binding / photoreceptor outer segment / developmental growth / G-protein alpha-subunit binding / D1 dopamine receptor binding / intracellular transport / GABA-ergic synapse / behavioral fear response / Hedgehog 'off' state / prepulse inhibition / adenylate cyclase-activating adrenergic receptor signaling pathway / beta-2 adrenergic receptor binding 類似検索 - 分子機能 | |||||||||||||||
生物種 | ![]() ![]() ![]() ![]() ![]() ![]() ![]() | |||||||||||||||
手法 | 電子顕微鏡法 / 単粒子再構成法 / クライオ電子顕微鏡法 / 解像度: 3 Å | |||||||||||||||
![]() | Zhuang, Y. / Krumm, B. / Zhang, H. / Zhou, X.E. / Wang, Y. / Guo, J. / Huang, X.-P. / Liu, Y. / Wang, L. / Cheng, X. ...Zhuang, Y. / Krumm, B. / Zhang, H. / Zhou, X.E. / Wang, Y. / Guo, J. / Huang, X.-P. / Liu, Y. / Wang, L. / Cheng, X. / Jiang, Y. / Jiang, H. / Melcher, K. / Zhang, C. / Yi, W. / Roth, B.L. / Zhang, Y. / Xu, H.E. | |||||||||||||||
資金援助 | ![]() ![]()
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![]() | ![]() タイトル: Mechanism of dopamine binding and allosteric modulation of the human D1 dopamine receptor. 著者: Youwen Zhuang / Brian Krumm / Huibing Zhang / X Edward Zhou / Yue Wang / Xi-Ping Huang / Yongfeng Liu / Xi Cheng / Yi Jiang / Hualiang Jiang / Cheng Zhang / Wei Yi / Bryan L Roth / Yan Zhang / H Eric Xu / ![]() ![]() #1: ![]() タイトル: Mechanism of dopamine binding and allosteric modulation of the human D1 dopamine receptor 著者: Zhuang, Y. / Krumm, B. / Zhang, H. / Zhou, X.E. / Wang, Y. / Guo, J. / Huang, X.-P. / Liu, Y. / Wang, L. / Cheng, X. / Jiang, Y. / Jiang, H. / Melcher, K. / Zhang, C. / Yi, W. / Roth, B.L. / Zhang, Y. / Xu, H.E. | |||||||||||||||
履歴 |
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構造の表示
ムービー |
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構造ビューア | 分子: ![]() ![]() |
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ダウンロードとリンク
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ダウンロード
PDBx/mmCIF形式 | ![]() | 227.9 KB | 表示 | ![]() |
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PDB形式 | ![]() | 184.4 KB | 表示 | ![]() |
PDBx/mmJSON形式 | ![]() | ツリー表示 | ![]() | |
その他 | ![]() |
-検証レポート
文書・要旨 | ![]() | 1.2 MB | 表示 | ![]() |
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文書・詳細版 | ![]() | 1.2 MB | 表示 | |
XML形式データ | ![]() | 34 KB | 表示 | |
CIF形式データ | ![]() | 51.6 KB | 表示 | |
アーカイブディレクトリ | ![]() ![]() | HTTPS FTP |
-関連構造データ
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リンク
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集合体
登録構造単位 | ![]()
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要素
-タンパク質 , 2種, 2分子 RA
#1: タンパク質 | 分子量: 55668.707 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) ![]() 発現宿主: ![]() ![]() 参照: UniProt: P21728 |
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#2: タンパク質 | 分子量: 29048.932 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) ![]() 発現宿主: ![]() ![]() 参照: UniProt: P63092*PLUS |
-Guanine nucleotide-binding protein ... , 2種, 2分子 BG
#3: タンパク質 | 分子量: 39020.664 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) ![]() ![]() 発現宿主: ![]() ![]() 参照: UniProt: P54311 |
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#4: タンパク質 | 分子量: 7432.554 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) ![]() ![]() 発現宿主: ![]() ![]() 参照: UniProt: P63212 |
-抗体 , 1種, 1分子 N
#5: 抗体 | 分子量: 14845.516 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) ![]() ![]() ![]() ![]() |
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-非ポリマー , 4種, 14分子 ![](data/chem/img/SK0.gif)
![](data/chem/img/G4C.gif)
![](data/chem/img/CLR.gif)
![](data/chem/img/PLM.gif)
![](data/chem/img/G4C.gif)
![](data/chem/img/CLR.gif)
![](data/chem/img/PLM.gif)
#6: 化合物 | ChemComp-SK0 / ( | ||
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#7: 化合物 | ChemComp-G4C / | ||
#8: 化合物 | ChemComp-CLR / #9: 化合物 | ChemComp-PLM / |
-詳細
研究の焦点であるリガンドがあるか | Y |
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-実験情報
-実験
実験 | 手法: 電子顕微鏡法 |
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EM実験 | 試料の集合状態: PARTICLE / 3次元再構成法: 単粒子再構成法 |
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試料調製
構成要素 | 名称: LY3154207 and SKF-81297-bound dopamine receptor 1 in complex with Gi protein タイプ: COMPLEX / Entity ID: #1-#5 / 由来: RECOMBINANT | ||||||||||||||||||||
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由来(天然) |
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由来(組換発現) |
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緩衝液 | pH: 7.2 | ||||||||||||||||||||
試料 | 包埋: NO / シャドウイング: NO / 染色: NO / 凍結: YES | ||||||||||||||||||||
急速凍結 | 凍結剤: ETHANE |
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電子顕微鏡撮影
実験機器 | ![]() モデル: Titan Krios / 画像提供: FEI Company |
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顕微鏡 | モデル: FEI TITAN KRIOS |
電子銃 | 電子線源: ![]() |
電子レンズ | モード: BRIGHT FIELD |
撮影 | 電子線照射量: 64 e/Å2 フィルム・検出器のモデル: GATAN K2 SUMMIT (4k x 4k) |
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解析
ソフトウェア | 名称: PHENIX / バージョン: 1.13_2998: / 分類: 精密化 |
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CTF補正 | タイプ: NONE |
3次元再構成 | 解像度: 3 Å / 解像度の算出法: FSC 0.143 CUT-OFF / 粒子像の数: 212256 / 対称性のタイプ: POINT |