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- ChemComp-ORD: D-ORNITHINE -

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Basic information

EntryDatabase: PDB chemical components / ID: ORD
NameName: D-ornithine

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Chemical information

Composition
Formula: C5H12N2O2 / Number of atoms: 21 / Formula weight: 132.161 / Formal charge: 0
Others

1dsr

Type: D-PEPTIDE LINKING / PDB classification: ATOMP / Three letter code: ORD / Ideal coordinates details: Corina / Model coordinates PDB-ID: 1DSR
History
Create componentSep 8, 2010
Modify descriptorJun 4, 2011
Modify backboneNov 3, 2023
External linksUniChem / ChemSpider / Brenda / ChEBI / ChEMBL / CompTox / HMDB / PubChem / SureChEMBL / Wikipedia search / Google search

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Details

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SMILES

ACDLabs 10.04O=C(O)C(N)CCCN
CACTVS 3.352NCCC[CH](N)C(O)=O
OpenEye OEToolkits 1.6.1C(CC(C(=O)O)N)CN

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SMILES CANONICAL

CACTVS 3.352NCCC[C@@H](N)C(O)=O
OpenEye OEToolkits 1.6.1C(C[C@H](C(=O)O)N)CN

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InChI

InChI 1.03InChI=1S/C5H12N2O2/c6-3-1-2-4(7)5(8)9/h4H,1-3,6-7H2,(H,8,9)/t4-/m1/s1

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InChIKey

InChI 1.03AHLPHDHHMVZTML-SCSAIBSYSA-N

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SYSTEMATIC NAME

ACDLabs 10.04D-ornithine
OpenEye OEToolkits 1.6.1(2R)-2,5-diaminopentanoic acid

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PDB entries

Showing all 4 items

PDB-4ffn:
PylC in complex with D-ornithine and AMPPNP

PDB-8apz:
Crystal structure of wild-type L-N-Carbamoylase from Sinorhizobium meliloti

PDB-8g97:
Adenylation domain structure from NRPS-like Delta-Poly-L-Ornithine synthetase (D-Ornithine bound)

PDB-9nq5:
D-Ornithine/D-lysine decarboxylase C387A complexed with HEPES, putrescine, and D-ornithine

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