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- ChemComp-SY8: 5-azanylpentan-2-one -

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Basic information

EntryDatabase: PDB chemical components / ID: SY8
NameName: 5-azanylpentan-2-one

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Chemical information

Composition
Formula: C5H11NO / Number of atoms: 18 / Formula weight: 101.147 / Formal charge: 0
Others

7b5l

Type: non-polymer / PDB classification: HETAIN / Three letter code: SY8 / Ideal coordinates details: Corina / Model coordinates PDB-ID: 7B5L
History
Create componentDec 4, 2020
Initial releaseFeb 10, 2021
External linksUniChem / ChemSpider / PubChem / SureChEMBL / ZINC / Wikipedia search / Google search

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Details

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SMILES

CACTVS 3.385CC(=O)CCCN
OpenEye OEToolkits 2.0.7CC(=O)CCCN

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SMILES CANONICAL

CACTVS 3.385CC(=O)CCCN
OpenEye OEToolkits 2.0.7CC(=O)CCCN

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InChI

InChI 1.03InChI=1S/C5H11NO/c1-5(7)3-2-4-6/h2-4,6H2,1H3

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InChIKey

InChI 1.03VTHKLCWOLNQWHB-UHFFFAOYSA-N

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PDB entries

Showing all 5 items

PDB-7b5l:
Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: NEDD8-CUL1-RBX1-SKP1-SKP2-CKSHS1-Cyclin A-CDK2-p27-UBE2L3~Ub~ARIH1. Transition State 1

PDB-7b5n:
Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: NEDD8-CUL1-RBX1-UBE2L3~Ub~ARIH1.

PDB-8c07:
Structure of HECT E3 UBR5 forming K48 linked Ubiquitin chains

PDB-8pql:
K48-linked ubiquitin chain formation with a cullin-RING E3 ligase and Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2-donor UB-acceptor UB-SIL1 peptide

PDB-8r5h:
Ubiquitin ligation to neosubstrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-VHL-MZ1 with trapped UBE2R2~donor UB-BRD4 BD2

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