- PDB-7qhn: CRYSTAL STRUCTURE OF LYSYL-TRNA SYNTHETASE FROM Mycobacterium tub... -
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基本情報
登録情報
データベース: PDB / ID: 7qhn
タイトル
CRYSTAL STRUCTURE OF LYSYL-TRNA SYNTHETASE FROM Mycobacterium tuberculosis COMPLEXED WITH L-LYSINE and an inhibitor
要素
Lysine--tRNA ligase 1
キーワード
LIGASE / Mycobacterium tuberculosis / ATP binding
機能・相同性
機能・相同性情報
ATP:ADP adenylyltransferase activity / lysine-tRNA ligase / lysine-tRNA ligase activity / lysyl-tRNA aminoacylation / diadenosine tetraphosphate biosynthetic process / aminoacyl-tRNA synthetase multienzyme complex / positive regulation of macrophage activation / tRNA binding / magnesium ion binding / extracellular space ...ATP:ADP adenylyltransferase activity / lysine-tRNA ligase / lysine-tRNA ligase activity / lysyl-tRNA aminoacylation / diadenosine tetraphosphate biosynthetic process / aminoacyl-tRNA synthetase multienzyme complex / positive regulation of macrophage activation / tRNA binding / magnesium ion binding / extracellular space / ATP binding / cytosol 類似検索 - 分子機能
Lysine-tRNA ligase, class II, N-terminal / Lysine-tRNA ligase, class II / Lysyl-tRNA synthetase, class II, C-terminal / Aminoacyl-tRNA synthetase, class II (D/K/N) / tRNA synthetases class II (D, K and N) / OB-fold nucleic acid binding domain, AA-tRNA synthetase-type / OB-fold nucleic acid binding domain / Aminoacyl-tRNA synthetase, class II / Aminoacyl-transfer RNA synthetases class-II family profile. / Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) / Nucleic acid-binding, OB-fold 類似検索 - ドメイン・相同性
温度: 293 K / 手法: 蒸気拡散法, ハンギングドロップ法 / pH: 7.5 詳細: Reservoir: 0.25 M NaOAc and 14% w/v PEG 3350 Protein buffer:100 mM HEPES, 150 mM NaCl, 5% glycerol, pH 7.5 Protein conc ~20mg/ml Temp details: Room temperature
解像度: 2.58→72.26 Å / Cor.coef. Fo:Fc: 0.899 / Cor.coef. Fo:Fc free: 0.882 / SU B: 28.305 / SU ML: 0.527 / 交差検証法: THROUGHOUT / σ(F): 0 / ESU R: 1.224 / ESU R Free: 0.425 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
Rfactor
反射数
%反射
Selection details
Rfree
0.3391
786
4.7 %
RANDOM
Rwork
0.2929
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obs
0.2951
15842
99.29 %
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溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: MASK