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Open data
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Basic information
Entry | Database: PDB / ID: 6et8 | ||||||
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Title | Crystal structure of AlbA in complex with albicidin | ||||||
![]() | Albicidin resistance protein | ||||||
![]() | PROTEIN BINDING / albicidin / AlbA | ||||||
Function / homology | TipAS antibiotic-recognition domain / TipAS antibiotic-recognition domain / albicidin / Albicidin resistance protein![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Driller, R. / Rostock, L. / Alings, C. / Graetz, S. / Suessmuth, R. / Mainz, A. / Wahl, M.C. / Loll, B. | ||||||
![]() | ![]() Title: Molecular insights into antibiotic resistance - how a binding protein traps albicidin. Authors: Rostock, L. / Driller, R. / Gratz, S. / Kerwat, D. / von Eckardstein, L. / Petras, D. / Kunert, M. / Alings, C. / Schmitt, F.J. / Friedrich, T. / Wahl, M.C. / Loll, B. / Mainz, A. / Sussmuth, R.D. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 207.1 KB | Display | ![]() |
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PDB format | ![]() | 176.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Experimental dataset #1 | Data reference: ![]() |
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 26581.107 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Details: First residues is an artefact of the tag sequence. SeMet-labelled protein has been crystallised. Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | #3: Chemical | ChemComp-SO4 / | #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.56 Å3/Da / Density % sol: 51.9 % |
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Crystal grow | Temperature: 291.15 K / Method: vapor diffusion, sitting drop / Details: 0.1 M Tris pH 8.5 2.0 M ammonium sulfate |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Mar 9, 2017 |
Radiation | Monochromator: SI111-DCM / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97949 Å / Relative weight: 1 |
Reflection | Resolution: 1.7→50 Å / Num. obs: 113199 / % possible obs: 100 % / Redundancy: 13.5 % / Rrim(I) all: 0.11 / Net I/σ(I): 16.53 |
Reflection shell | Resolution: 1.7→1.74 Å / Redundancy: 13.62 % / Mean I/σ(I) obs: 1.49 / Num. unique all: 8420 / CC1/2: 0.669 / Rrim(I) all: 1.796 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.7→42.048 Å
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Refine LS restraints |
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LS refinement shell |
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Refinement TLS params. | Method: refined / Refine-ID: X-RAY DIFFRACTION
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Refinement TLS group |
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