A: Kinesin-like protein KIF13B B: Kinesin-like protein KIF13B C: Arf-GAP with dual PH domain-containing protein 1 D: Arf-GAP with dual PH domain-containing protein 1 ヘテロ分子
解像度: 2.952→29.437 Å / Cor.coef. Fo:Fc: 0.913 / Cor.coef. Fo:Fc free: 0.881 / WRfactor Rfree: 0.248 / WRfactor Rwork: 0.205 / SU B: 18.738 / SU ML: 0.349 / 交差検証法: THROUGHOUT / σ(F): 0 / ESU R: 0 / ESU R Free: 0.427 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY. The programs PHENIX and COOT and the PRODRG and MOLPRPOBITY servers were also used during refinement.
Rfactor
反射数
%反射
Selection details
Rfree
0.277
978
3.526 %
thin shells
Rwork
0.225
-
-
-
obs
0.227
27736
99.964 %
-
溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: MASK BULK SOLVENT
原子変位パラメータ
Biso mean: 51.231 Å2
Baniso -1
Baniso -2
Baniso -3
1-
0.609 Å2
0 Å2
0 Å2
2-
-
0.609 Å2
0 Å2
3-
-
-
-1.218 Å2
精密化ステップ
サイクル: LAST / 解像度: 2.952→29.437 Å
タンパク質
核酸
リガンド
溶媒
全体
原子数
7066
0
41
0
7107
拘束条件
Refine-ID
タイプ
Dev ideal
Dev ideal target
数
X-RAY DIFFRACTION
r_bond_refined_d
0.011
0.021
7291
X-RAY DIFFRACTION
r_bond_other_d
0.001
0.02
4891
X-RAY DIFFRACTION
r_angle_refined_deg
1.158
1.942
9911
X-RAY DIFFRACTION
r_angle_other_deg
0.806
3
11802
X-RAY DIFFRACTION
r_dihedral_angle_1_deg
5.974
5
901
X-RAY DIFFRACTION
r_dihedral_angle_2_deg
32.67
23.265
343
X-RAY DIFFRACTION
r_dihedral_angle_3_deg
15.777
15
1078
X-RAY DIFFRACTION
r_dihedral_angle_4_deg
17.559
15
47
X-RAY DIFFRACTION
r_chiral_restr
0.068
0.2
1046
X-RAY DIFFRACTION
r_gen_planes_refined
0.005
0.021
8249
X-RAY DIFFRACTION
r_gen_planes_other
0.001
0.02
1592
X-RAY DIFFRACTION
r_mcbond_it
1.136
2
4540
X-RAY DIFFRACTION
r_mcbond_other
0.143
2
1823
X-RAY DIFFRACTION
r_mcangle_it
1.994
3
7203
X-RAY DIFFRACTION
r_scbond_it
0.86
2
2751
X-RAY DIFFRACTION
r_scangle_it
1.421
3
2708
LS精密化 シェル
Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 20