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Yorodumi- PDB-3kg2: AMPA subtype ionotropic glutamate receptor in complex with compet... -
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Basic information
| Entry | Database: PDB / ID: 3kg2 | |||||||||
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| Title | AMPA subtype ionotropic glutamate receptor in complex with competitive antagonist ZK 200775 | |||||||||
Components | Glutamate receptor 2 | |||||||||
Keywords | membrane protein / transport protein / ion channel / Cell membrane / Glycoprotein / Ion transport / Membrane / Postsynaptic cell membrane / Receptor / RNA editing / Synapse / Transmembrane / Transport / tetramer | |||||||||
| Function / homology | Function and homology informationspine synapse / dendritic spine neck / dendritic spine cytoplasm / dendritic spine head / cellular response to amine stimulus / perisynaptic space / Activation of AMPA receptors / ligand-gated monoatomic cation channel activity / AMPA glutamate receptor activity / response to lithium ion ...spine synapse / dendritic spine neck / dendritic spine cytoplasm / dendritic spine head / cellular response to amine stimulus / perisynaptic space / Activation of AMPA receptors / ligand-gated monoatomic cation channel activity / AMPA glutamate receptor activity / response to lithium ion / Trafficking of GluR2-containing AMPA receptors / AMPA glutamate receptor clustering / kainate selective glutamate receptor activity / cellular response to glycine / immunoglobulin binding / AMPA glutamate receptor complex / asymmetric synapse / extracellularly glutamate-gated ion channel activity / conditioned place preference / regulation of receptor recycling / ionotropic glutamate receptor complex / glutamate receptor binding / Unblocking of NMDA receptors, glutamate binding and activation / positive regulation of synaptic transmission / regulation of synaptic transmission, glutamatergic / response to fungicide / regulation of long-term synaptic depression / cytoskeletal protein binding / glutamate-gated receptor activity / extracellular ligand-gated monoatomic ion channel activity / cellular response to brain-derived neurotrophic factor stimulus / glutamate-gated calcium ion channel activity / presynaptic active zone membrane / somatodendritic compartment / dendrite membrane / ionotropic glutamate receptor binding / excitatory synapse / ligand-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential / ionotropic glutamate receptor signaling pathway / dendrite cytoplasm / positive regulation of excitatory postsynaptic potential / synaptic membrane / dendritic shaft / SNARE binding / PDZ domain binding / synaptic transmission, glutamatergic / transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential / protein tetramerization / establishment of protein localization / cerebral cortex development / postsynaptic density membrane / modulation of chemical synaptic transmission / receptor internalization / Schaffer collateral - CA1 synapse / terminal bouton / synaptic vesicle / synaptic vesicle membrane / long-term synaptic potentiation / signaling receptor activity / presynapse / amyloid-beta binding / growth cone / presynaptic membrane / scaffold protein binding / perikaryon / dendritic spine / chemical synaptic transmission / postsynaptic membrane / neuron projection / postsynaptic density / axon / external side of plasma membrane / neuronal cell body / dendrite / synapse / protein kinase binding / protein-containing complex binding / glutamatergic synapse / cell surface / endoplasmic reticulum / protein-containing complex / identical protein binding / membrane / plasma membrane Similarity search - Function | |||||||||
| Biological species | ![]() | |||||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.6 Å | |||||||||
Authors | Sobolevsky, A.I. / Rosconi, M.P. / Gouaux, E. | |||||||||
Citation | Journal: Nature / Year: 2009Title: X-ray structure, symmetry and mechanism of an AMPA-subtype glutamate receptor. Authors: Sobolevsky, A.I. / Rosconi, M.P. / Gouaux, E. | |||||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 3kg2.cif.gz | 1.1 MB | Display | PDBx/mmCIF format |
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| PDB format | pdb3kg2.ent.gz | 955.9 KB | Display | PDB format |
| PDBx/mmJSON format | 3kg2.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/kg/3kg2 ftp://data.pdbj.org/pub/pdb/validation_reports/kg/3kg2 | HTTPS FTP |
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-Related structure data
| Related structure data | ![]() 3kgcC ![]() 1ftlS ![]() 3h5vS C: citing same article ( S: Starting model for refinement |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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