+Open data
-Basic information
Entry | Database: EMDB / ID: EMD-23749 | ||||||||||||
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Title | Human Cholecystokinin 1 receptor (CCK1R) Gs complex | ||||||||||||
Map data | consensus map | ||||||||||||
Sample |
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Keywords | GPCR / MEMBRANE PROTEIN / MEMBRANE PROTEIN-SIGNALING PROTEIN complex | ||||||||||||
Function / homology | Function and homology information cholecystokinin receptor activity / cholecystokinin signaling pathway / regulation of hormone secretion / neuropeptide hormone activity / G-protein activation / Activation of the phototransduction cascade / Glucagon-type ligand receptors / Thromboxane signalling through TP receptor / Sensory perception of sweet, bitter, and umami (glutamate) taste / G beta:gamma signalling through PI3Kgamma ...cholecystokinin receptor activity / cholecystokinin signaling pathway / regulation of hormone secretion / neuropeptide hormone activity / G-protein activation / Activation of the phototransduction cascade / Glucagon-type ligand receptors / Thromboxane signalling through TP receptor / Sensory perception of sweet, bitter, and umami (glutamate) taste / G beta:gamma signalling through PI3Kgamma / G beta:gamma signalling through CDC42 / Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding / Activation of G protein gated Potassium channels / Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits / Ca2+ pathway / G alpha (z) signalling events / Vasopressin regulates renal water homeostasis via Aquaporins / Glucagon-like Peptide-1 (GLP1) regulates insulin secretion / Adrenaline,noradrenaline inhibits insulin secretion / ADP signalling through P2Y purinoceptor 12 / G alpha (q) signalling events / Thrombin signalling through proteinase activated receptors (PARs) / G alpha (i) signalling events / alkylglycerophosphoethanolamine phosphodiesterase activity / photoreceptor outer segment membrane / eating behavior / peptide hormone receptor binding / spectrin binding / PKA activation in glucagon signalling / peptide hormone binding / hair follicle placode formation / developmental growth / photoreceptor outer segment / D1 dopamine receptor binding / intracellular transport / renal water homeostasis / Hedgehog 'off' state / adenylate cyclase-activating adrenergic receptor signaling pathway / activation of adenylate cyclase activity / cellular response to hormone stimulus / forebrain development / digestion / cardiac muscle cell apoptotic process / cellular response to glucagon stimulus / adenylate cyclase activator activity / regulation of insulin secretion / photoreceptor inner segment / Peptide ligand-binding receptors / axonogenesis / trans-Golgi network membrane / negative regulation of inflammatory response to antigenic stimulus / neuron migration / peptide binding / bone development / G-protein beta/gamma-subunit complex binding / adenylate cyclase-activating G protein-coupled receptor signaling pathway / hormone activity / G protein activity / G beta:gamma signalling through PLC beta / Presynaptic function of Kainate receptors / Thromboxane signalling through TP receptor / G-protein activation / platelet aggregation / Activation of G protein gated Potassium channels / Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits / Prostacyclin signalling through prostacyclin receptor / Glucagon signaling in metabolic regulation / G beta:gamma signalling through CDC42 / cognition / G beta:gamma signalling through BTK / ADP signalling through P2Y purinoceptor 12 / Glucagon-type ligand receptors / Adrenaline,noradrenaline inhibits insulin secretion / Vasopressin regulates renal water homeostasis via Aquaporins / G alpha (z) signalling events / Glucagon-like Peptide-1 (GLP1) regulates insulin secretion / cellular response to catecholamine stimulus / ADORA2B mediated anti-inflammatory cytokines production / sensory perception of taste / ADP signalling through P2Y purinoceptor 1 / G beta:gamma signalling through PI3Kgamma / adenylate cyclase-activating dopamine receptor signaling pathway / Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding / GPER1 signaling / cellular response to prostaglandin E stimulus / G-protein beta-subunit binding / heterotrimeric G-protein complex / sensory perception of smell / G alpha (12/13) signalling events / signaling receptor complex adaptor activity / Thrombin signalling through proteinase activated receptors (PARs) / GTPase binding / retina development in camera-type eye / positive regulation of cold-induced thermogenesis / Ca2+ pathway / phospholipase C-activating G protein-coupled receptor signaling pathway / positive regulation of cytosolic calcium ion concentration / cellular response to hypoxia / cell body / G alpha (i) signalling events Similarity search - Function | ||||||||||||
Biological species | Homo sapiens (human) / Rattus norvegicus (Norway rat) / Lama glama (llama) | ||||||||||||
Method | single particle reconstruction / cryo EM / Resolution: 1.95 Å | ||||||||||||
Authors | Mobbs JI / Belousoff MJ | ||||||||||||
Funding support | Australia, Japan, 3 items
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Citation | Journal: PLoS Biol / Year: 2021 Title: Structures of the human cholecystokinin 1 (CCK1) receptor bound to Gs and Gq mimetic proteins provide insight into mechanisms of G protein selectivity. Authors: Jesse I Mobbs / Matthew J Belousoff / Kaleeckal G Harikumar / Sarah J Piper / Xiaomeng Xu / Sebastian G B Furness / Hari Venugopal / Arthur Christopoulos / Radostin Danev / Denise Wootten / ...Authors: Jesse I Mobbs / Matthew J Belousoff / Kaleeckal G Harikumar / Sarah J Piper / Xiaomeng Xu / Sebastian G B Furness / Hari Venugopal / Arthur Christopoulos / Radostin Danev / Denise Wootten / David M Thal / Laurence J Miller / Patrick M Sexton / Abstract: G protein-coupled receptors (GPCRs) are critical regulators of cellular function acting via heterotrimeric G proteins as their primary transducers with individual GPCRs capable of pleiotropic ...G protein-coupled receptors (GPCRs) are critical regulators of cellular function acting via heterotrimeric G proteins as their primary transducers with individual GPCRs capable of pleiotropic coupling to multiple G proteins. Structural features governing G protein selectivity and promiscuity are currently unclear. Here, we used cryo-electron microscopy (cryo-EM) to determine structures of the cholecystokinin (CCK) type 1 receptor (CCK1R) bound to the CCK peptide agonist, CCK-8 and 2 distinct transducer proteins, its primary transducer Gq, and the more weakly coupled Gs. As seen with other Gq/11-GPCR complexes, the Gq-α5 helix (αH5) bound to a relatively narrow pocket in the CCK1R core. Surprisingly, the backbone of the CCK1R and volume of the G protein binding pocket were essentially equivalent when Gs was bound, with the Gs αH5 displaying a conformation that arises from "unwinding" of the far carboxyl-terminal residues, compared to canonically Gs coupled receptors. Thus, integrated changes in the conformations of both the receptor and G protein are likely to play critical roles in the promiscuous coupling of individual GPCRs. #1: Journal: Biorxiv / Year: 2021 Title: Structures of the human cholecystokinin 1 (CCK1) receptor bound to Gs and Gq mimetic proteins: insight into mechanisms of G protein selectivity Authors: Mobbs J / Belousoff MJ / Harikumar KG / Piper SJ / Xu X / Furness SGB / Venugopal H / Christopoulos A / Danev R / Wootten D / Thal DM / Miller LJ / Sexton PM | ||||||||||||
History |
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-Structure visualization
Movie |
Movie viewer |
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Structure viewer | EM map: SurfViewMolmilJmol/JSmol |
Supplemental images |
-Downloads & links
-EMDB archive
Map data | emd_23749.map.gz | 71.6 MB | EMDB map data format | |
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Header (meta data) | emd-23749-v30.xml emd-23749.xml | 31.7 KB 31.7 KB | Display Display | EMDB header |
FSC (resolution estimation) | emd_23749_fsc.xml | 10.2 KB | Display | FSC data file |
Images | emd_23749.png | 136.9 KB | ||
Masks | emd_23749_msk_1.map emd_23749_msk_2.map | 91.1 MB 91.1 MB | Mask map | |
Filedesc metadata | emd-23749.cif.gz | 7.4 KB | ||
Others | emd_23749_additional_1.map.gz emd_23749_additional_2.map.gz emd_23749_additional_3.map.gz emd_23749_half_map_1.map.gz emd_23749_half_map_2.map.gz | 71.4 MB 71.8 MB 71.8 MB 71.8 MB 71.9 MB | ||
Archive directory | http://ftp.pdbj.org/pub/emdb/structures/EMD-23749 ftp://ftp.pdbj.org/pub/emdb/structures/EMD-23749 | HTTPS FTP |
-Validation report
Summary document | emd_23749_validation.pdf.gz | 883.6 KB | Display | EMDB validaton report |
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Full document | emd_23749_full_validation.pdf.gz | 883.2 KB | Display | |
Data in XML | emd_23749_validation.xml.gz | 17.5 KB | Display | |
Data in CIF | emd_23749_validation.cif.gz | 23 KB | Display | |
Arichive directory | https://ftp.pdbj.org/pub/emdb/validation_reports/EMD-23749 ftp://ftp.pdbj.org/pub/emdb/validation_reports/EMD-23749 | HTTPS FTP |
-Related structure data
Related structure data | 7mbxMC 7mbyC M: atomic model generated by this map C: citing same article (ref.) |
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Similar structure data |
-Links
EMDB pages | EMDB (EBI/PDBe) / EMDataResource |
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Related items in Molecule of the Month |
-Map
File | Download / File: emd_23749.map.gz / Format: CCP4 / Size: 91.1 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Annotation | consensus map | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Projections & slices | Image control
Images are generated by Spider. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Voxel size | X=Y=Z: 0.79444 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Details | EMDB XML:
CCP4 map header:
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-Supplemental data
-Mask #1
File | emd_23749_msk_1.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Mask #2
File | emd_23749_msk_2.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Additional map: receptor focused map
File | emd_23749_additional_1.map | ||||||||||||
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Annotation | receptor focused map | ||||||||||||
Projections & Slices |
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Density Histograms |
-Additional map: receptor focused half map 1
File | emd_23749_additional_2.map | ||||||||||||
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Annotation | receptor focused half map 1 | ||||||||||||
Projections & Slices |
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Density Histograms |
-Additional map: receptor focused half map 2
File | emd_23749_additional_3.map | ||||||||||||
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Annotation | receptor focused half map 2 | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: consensus half map 1
File | emd_23749_half_map_1.map | ||||||||||||
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Annotation | consensus half map 1 | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: consensus half map 2
File | emd_23749_half_map_2.map | ||||||||||||
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Annotation | consensus half map 2 | ||||||||||||
Projections & Slices |
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Density Histograms |
-Sample components
+Entire : CCK1R/CCK-8/Gas complex
+Supramolecule #1: CCK1R/CCK-8/Gas complex
+Supramolecule #2: Cholecystokinin receptor type A
+Supramolecule #3: Guanine nucleotide-binding protein G(s) subunits alpha and gamma
+Supramolecule #4: Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
+Supramolecule #5: Nanobody35
+Supramolecule #6: Cholecystokinin-8
+Macromolecule #1: Guanine nucleotide-binding protein G(s) subunit alpha isoforms short
+Macromolecule #2: Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
+Macromolecule #3: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
+Macromolecule #4: Nanobody35
+Macromolecule #5: Cholecystokinin-8
+Macromolecule #6: Cholecystokinin receptor type A
+Macromolecule #7: CHOLESTEROL HEMISUCCINATE
+Macromolecule #8: water
-Experimental details
-Structure determination
Method | cryo EM |
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Processing | single particle reconstruction |
Aggregation state | particle |
-Sample preparation
Concentration | 4.1 mg/mL |
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Buffer | pH: 7.5 |
Vitrification | Cryogen name: ETHANE |
-Electron microscopy
Microscope | TFS KRIOS |
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Image recording | Film or detector model: GATAN K3 BIOQUANTUM (6k x 4k) / Average electron dose: 70.56 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD |
Experimental equipment | Model: Titan Krios / Image courtesy: FEI Company |