- EMDB-21959: Colicin E1 fragment in nanodisc-embedded TolC -
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基本情報
登録情報
データベース: EMDB / ID: EMD-21959
タイトル
Colicin E1 fragment in nanodisc-embedded TolC
マップデータ
asymmetric map of colicin E1 bound to TolC in nanodisc; cropped, sharpened, and resampled
試料
複合体: Colicin E1 fragment colE1-T inside nanodisc-embedded TolC
複合体: Outer membrane protein TolC
タンパク質・ペプチド: Outer membrane protein TolC
複合体: Colicin E1 fragment colE1-T
タンパク質・ペプチド: Colicin-E1
キーワード
antibiotic efflux / bacteriocin / TRANSPORT PROTEIN / ANTIMICROBIAL PROTEIN
機能・相同性
機能・相同性情報
negative regulation of ion transmembrane transporter activity / MacAB-TolC complex / enterobactin transport / pore-forming activity / bile acid transmembrane transporter activity / xenobiotic detoxification by transmembrane export across the cell outer membrane / efflux pump complex / periplasmic side of plasma membrane / xenobiotic detoxification by transmembrane export across the plasma membrane / bile acid and bile salt transport ...negative regulation of ion transmembrane transporter activity / MacAB-TolC complex / enterobactin transport / pore-forming activity / bile acid transmembrane transporter activity / xenobiotic detoxification by transmembrane export across the cell outer membrane / efflux pump complex / periplasmic side of plasma membrane / xenobiotic detoxification by transmembrane export across the plasma membrane / bile acid and bile salt transport / porin activity / efflux transmembrane transporter activity / monoatomic ion transmembrane transport / cell outer membrane / response to organic cyclic compound / response to toxic substance / monoatomic ion channel activity / outer membrane-bounded periplasmic space / defense response to Gram-negative bacterium / killing of cells of another organism / transmembrane transporter binding / response to xenobiotic stimulus / response to antibiotic / identical protein binding / membrane / plasma membrane 類似検索 - 分子機能
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
DP2GM128201
米国
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
P20GM113117
米国
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
P20GM103638
米国
引用
ジャーナル: Elife / 年: 2022 タイトル: Colicin E1 opens its hinge to plug TolC. 著者: S Jimmy Budiardjo / Jacqueline J Stevens / Anna L Calkins / Ayotunde P Ikujuni / Virangika K Wimalasena / Emre Firlar / David A Case / Julie S Biteen / Jason T Kaelber / Joanna S G Slusky / 要旨: The double membrane architecture of Gram-negative bacteria forms a barrier that is impermeable to most extracellular threats. Bacteriocin proteins evolved to exploit the accessible, surface-exposed ...The double membrane architecture of Gram-negative bacteria forms a barrier that is impermeable to most extracellular threats. Bacteriocin proteins evolved to exploit the accessible, surface-exposed proteins embedded in the outer membrane to deliver cytotoxic cargo. Colicin E1 is a bacteriocin produced by, and lethal to, that hijacks the outer membrane proteins (OMPs) TolC and BtuB to enter the cell. Here, we capture the colicin E1 translocation domain inside its membrane receptor, TolC, by high-resolution cryo-electron microscopy to obtain the first reported structure of a bacteriocin bound to TolC. Colicin E1 binds stably to TolC as an open hinge through the TolC pore-an architectural rearrangement from colicin E1's unbound conformation. This binding is stable in live cells as indicated by single-molecule fluorescence microscopy. Finally, colicin E1 fragments binding to TolC plug the channel, inhibiting its native efflux function as an antibiotic efflux pump, and heightening susceptibility to three antibiotic classes. In addition to demonstrating that these protein fragments are useful starting points for developing novel antibiotic potentiators, this method could be expanded to other colicins to inhibit other OMP functions.