+データを開く
-基本情報
登録情報 | データベース: PDB / ID: 1shd | ||||||
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タイトル | PEPTIDE INHIBITORS OF SRC SH3-SH2-PHOSPHOPROTEIN INTERACTIONS | ||||||
要素 |
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キーワード | COMPLEX(TRANSFERASE/PEPTIDE) / COMPLEX(TRANSFERASE-PEPTIDE) / COMPLEX(TRANSFERASE-PEPTIDE) complex | ||||||
機能・相同性 | 機能・相同性情報 regulation of toll-like receptor 3 signaling pathway / positive regulation of non-membrane spanning protein tyrosine kinase activity / primary ovarian follicle growth / regulation of caveolin-mediated endocytosis / positive regulation of ovarian follicle development / cellular response to prolactin / positive regulation of platelet-derived growth factor receptor-beta signaling pathway / positive regulation of male germ cell proliferation / dendritic filopodium / regulation of cell projection assembly ...regulation of toll-like receptor 3 signaling pathway / positive regulation of non-membrane spanning protein tyrosine kinase activity / primary ovarian follicle growth / regulation of caveolin-mediated endocytosis / positive regulation of ovarian follicle development / cellular response to prolactin / positive regulation of platelet-derived growth factor receptor-beta signaling pathway / positive regulation of male germ cell proliferation / dendritic filopodium / regulation of cell projection assembly / regulation of cell-cell adhesion / positive regulation of dephosphorylation / response to mineralocorticoid / Regulation of commissural axon pathfinding by SLIT and ROBO / ERBB2 signaling pathway / regulation of epithelial cell migration / entry of bacterium into host cell / positive regulation of protein transport / Regulation of gap junction activity / regulation of vascular permeability / BMP receptor binding / positive regulation of lamellipodium morphogenesis / cellular response to progesterone stimulus / positive regulation of integrin activation / Activated NTRK2 signals through FYN / negative regulation of focal adhesion assembly / positive regulation of protein processing / skeletal muscle cell proliferation / negative regulation of telomerase activity / intestinal epithelial cell development / Netrin mediated repulsion signals / regulation of intracellular estrogen receptor signaling pathway / CD28 co-stimulation / positive regulation of glucose metabolic process / transcytosis / Activated NTRK3 signals through PI3K / connexin binding / cellular response to fluid shear stress / focal adhesion assembly / response to acidic pH / signal complex assembly / podosome / positive regulation of small GTPase mediated signal transduction / positive regulation of Ras protein signal transduction / Regulation of RUNX1 Expression and Activity / regulation of bone resorption / positive regulation of podosome assembly / branching involved in mammary gland duct morphogenesis / DCC mediated attractive signaling / adherens junction organization / EPH-Ephrin signaling / myoblast proliferation / Ephrin signaling / osteoclast development / negative regulation of mitochondrial depolarization / 歯の発生 / cellular response to peptide hormone stimulus / Signal regulatory protein family interactions / cellular response to fatty acid / MET activates PTK2 signaling / regulation of early endosome to late endosome transport / oogenesis / Regulation of KIT signaling / postsynaptic specialization, intracellular component / Signaling by ALK / Receptor Mediated Mitophagy / GP1b-IX-V activation signalling / CTLA4 inhibitory signaling / leukocyte migration / phospholipase activator activity / interleukin-6-mediated signaling pathway / DNA biosynthetic process / Fc-gamma receptor signaling pathway involved in phagocytosis / EPHA-mediated growth cone collapse / negative regulation of hippo signaling / p130Cas linkage to MAPK signaling for integrins / positive regulation of epithelial cell migration / positive regulation of Notch signaling pathway / Signaling by EGFR / cellular response to platelet-derived growth factor stimulus / stress fiber assembly / positive regulation of smooth muscle cell migration / regulation of heart rate by cardiac conduction / RUNX2 regulates osteoblast differentiation / Recycling pathway of L1 / dendritic growth cone / progesterone receptor signaling pathway / stimulatory C-type lectin receptor signaling pathway / PECAM1 interactions / uterus development / phospholipase binding / neurotrophin TRK receptor signaling pathway / GRB2:SOS provides linkage to MAPK signaling for Integrins / 長期増強 / RHOU GTPase cycle / negative regulation of telomere maintenance via telomerase / platelet-derived growth factor receptor signaling pathway / negative regulation of anoikis / RET signaling / FCGR activation 類似検索 - 分子機能 | ||||||
生物種 | Homo sapiens (ヒト) | ||||||
手法 | X線回折 / 解像度: 2 Å | ||||||
データ登録者 | Gilmer, T. / Jordan, S. | ||||||
引用 | ジャーナル: J.Biol.Chem. / 年: 1994 タイトル: Peptide inhibitors of src SH3-SH2-phosphoprotein interactions. 著者: Gilmer, T. / Rodriguez, M. / Jordan, S. / Crosby, R. / Alligood, K. / Green, M. / Kimery, M. / Wagner, C. / Kinder, D. / Charifson, P. / Hassel, A.M. / Willard, D. / Luther, M. / Rusnak, D. / ...著者: Gilmer, T. / Rodriguez, M. / Jordan, S. / Crosby, R. / Alligood, K. / Green, M. / Kimery, M. / Wagner, C. / Kinder, D. / Charifson, P. / Hassel, A.M. / Willard, D. / Luther, M. / Rusnak, D. / Sternbach, D.D. / Mehrotra, M. / Peel, M. / Shampine, L. / Davis, R. / Robbins, J. / Patel, I.R. / Kassel, D. / Burkhart, W. / Moyer, M. / Bradshaw, T. / Berman, J. | ||||||
履歴 |
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-構造の表示
構造ビューア | 分子: MolmilJmol/JSmol |
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-ダウンロードとリンク
-ダウンロード
PDBx/mmCIF形式 | 1shd.cif.gz | 40 KB | 表示 | PDBx/mmCIF形式 |
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PDB形式 | pdb1shd.ent.gz | 27.4 KB | 表示 | PDB形式 |
PDBx/mmJSON形式 | 1shd.json.gz | ツリー表示 | PDBx/mmJSON形式 | |
その他 | その他のダウンロード |
-検証レポート
アーカイブディレクトリ | https://data.pdbj.org/pub/pdb/validation_reports/sh/1shd ftp://data.pdbj.org/pub/pdb/validation_reports/sh/1shd | HTTPS FTP |
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-関連構造データ
-リンク
-集合体
登録構造単位 |
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1 |
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単位格子 |
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Atom site foot note | 1: RESIDUE SG CYS A 188 HAS MULTIPLE CONFORMATIONS. |
-要素
#1: タンパク質 | 分子量: 12303.886 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Homo sapiens (ヒト) / プラスミド: pET11B / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P12931 |
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#2: タンパク質・ペプチド | 分子量: 787.705 Da / 分子数: 1 / 由来タイプ: 組換発現 |
#3: 水 | ChemComp-HOH / |
-実験情報
-実験
実験 | 手法: X線回折 |
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-試料調製
結晶 | マシュー密度: 2.71 Å3/Da / 溶媒含有率: 54.55 % | ||||||||||||||||||||
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結晶化 | *PLUS 温度: 22 ℃ / pH: 4.2 / 手法: 蒸気拡散法, ハンギングドロップ法 | ||||||||||||||||||||
溶液の組成 | *PLUS
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-データ収集
放射 | 散乱光タイプ: x-ray |
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放射波長 | 相対比: 1 |
-解析
ソフトウェア |
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精密化 | 解像度: 2→8 Å / σ(F): 2 /
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原子変位パラメータ | Biso mean: 20.5 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
精密化ステップ | サイクル: LAST / 解像度: 2→8 Å
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拘束条件 |
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ソフトウェア | *PLUS 名称: X-PLOR / 分類: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
精密化 | *PLUS Rfactor obs: 0.192 / Rfactor Rwork: 0.192 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
溶媒の処理 | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
原子変位パラメータ | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
拘束条件 | *PLUS タイプ: x_angle_d / Dev ideal: 2.8 |