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Yorodumi- PDB-1o86: Crystal Structure of Human Angiotensin Converting Enzyme in compl... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1o86 | ||||||
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Title | Crystal Structure of Human Angiotensin Converting Enzyme in complex with lisinopril. | ||||||
Components | ANGIOTENSIN CONVERTING ENZYMEAngiotensin-converting enzyme | ||||||
Keywords | HYDROLASE/HYDROLASE INHIBITOR / METALLOPROTEASE / PEPTIDYL DIPEPTIDASE / TYPE-I MEMBRANE-ANCHORED PROTEIN / HYDROLASE-HYDROLASE INHIBITOR COMPLEX | ||||||
Function / homology | Function and homology information mononuclear cell proliferation / cell proliferation in bone marrow / tripeptidyl-peptidase activity / bradykinin receptor binding / regulation of angiotensin metabolic process / exopeptidase activity / substance P catabolic process / response to laminar fluid shear stress / peptidyl-dipeptidase A / regulation of renal output by angiotensin ...mononuclear cell proliferation / cell proliferation in bone marrow / tripeptidyl-peptidase activity / bradykinin receptor binding / regulation of angiotensin metabolic process / exopeptidase activity / substance P catabolic process / response to laminar fluid shear stress / peptidyl-dipeptidase A / regulation of renal output by angiotensin / negative regulation of calcium ion import / positive regulation of peptidyl-cysteine S-nitrosylation / positive regulation of systemic arterial blood pressure / negative regulation of gap junction assembly / metallodipeptidase activity / cellular response to aldosterone / hormone catabolic process / bradykinin catabolic process / angiogenesis involved in coronary vascular morphogenesis / response to thyroid hormone / negative regulation of glucose import / vasoconstriction / neutrophil mediated immunity / hormone metabolic process / regulation of hematopoietic stem cell proliferation / regulation of smooth muscle cell migration / antigen processing and presentation of peptide antigen via MHC class I / mitogen-activated protein kinase binding / embryo development ending in birth or egg hatching / positive regulation of neurogenesis / chloride ion binding / mitogen-activated protein kinase kinase binding / eating behavior / arachidonic acid secretion / post-transcriptional regulation of gene expression / lung alveolus development / peptide catabolic process / heterocyclic compound binding / heart contraction / response to dexamethasone / regulation of heart rate by cardiac conduction / regulation of systemic arterial blood pressure by renin-angiotensin / regulation of vasoconstriction / peptidyl-dipeptidase activity / angiotensin maturation / hematopoietic stem cell differentiation / blood vessel remodeling / Metabolism of Angiotensinogen to Angiotensins / animal organ regeneration / amyloid-beta metabolic process / carboxypeptidase activity / positive regulation of vasoconstriction / sperm midpiece / blood vessel diameter maintenance / response to nutrient levels / basal plasma membrane / kidney development / female pregnancy / angiotensin-activated signaling pathway / cellular response to glucose stimulus / brush border membrane / regulation of synaptic plasticity / metalloendopeptidase activity / regulation of blood pressure / male gonad development / metallopeptidase activity / actin binding / peptidase activity / spermatogenesis / endopeptidase activity / response to lipopolysaccharide / lysosome / response to hypoxia / calmodulin binding / endosome / response to xenobiotic stimulus / positive regulation of apoptotic process / external side of plasma membrane / negative regulation of gene expression / proteolysis / extracellular space / extracellular exosome / zinc ion binding / extracellular region / plasma membrane Similarity search - Function | ||||||
Biological species | HOMO SAPIENS (human) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MAD / Resolution: 2 Å | ||||||
Authors | Natesh, R. / Schwager, S.L.U. / Sturrock, E.D. / Acharya, K.R. | ||||||
Citation | Journal: Nature / Year: 2003 Title: Crystal Structure of the Human Angiotensin-Converting Enzyme-Lisinopril Complex Authors: Natesh, R. / Schwager, S.L.U. / Sturrock, E.D. / Acharya, K.R. | ||||||
History |
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Remark 700 | SHEET DETERMINATION METHOD: AUTHOR PROVIDED. |
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1o86.cif.gz | 136.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1o86.ent.gz | 110.9 KB | Display | PDB format |
PDBx/mmJSON format | 1o86.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/o8/1o86 ftp://data.pdbj.org/pub/pdb/validation_reports/o8/1o86 | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
-Protein , 1 types, 1 molecules A
#1: Protein | Mass: 68068.922 Da / Num. of mol.: 1 / Fragment: RESIDUES 68-656 Source method: isolated from a genetically manipulated source Source: (gene. exp.) HOMO SAPIENS (human) / Organ: TESTISTesticle / Production host: CRICETULUS GRISEUS (Chinese hamster) References: UniProt: P22966, UniProt: P12821*PLUS, peptidyl-dipeptidase A |
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-Non-polymers , 5 types, 575 molecules
#2: Chemical | ChemComp-GLY / | ||
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#3: Chemical | ChemComp-ZN / | ||
#4: Chemical | ChemComp-LPR / [ | ||
#5: Chemical | #6: Water | ChemComp-HOH / | |
-Details
Compound details | CONVERTS ANGIOTENSIN I TO ANGIOTENSIN II BY RELEASE OF THE TERMINAL HIS-LEU, THIS RESULTS IN AN ...CONVERTS ANGIOTENSI |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.4 Å3/Da / Density % sol: 49 % | ||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | pH: 4.7 / Details: PEG4000/SODIUM ACETATE., PH 4.70 | ||||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 16 ℃ / Method: vapor diffusion | ||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K | ||||||||||||
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Diffraction source | Source: SYNCHROTRON / Site: ESRF / Beamline: BM14 / Wavelength: 0.9537,1.2825,1.2832 | ||||||||||||
Detector | Type: MARRESEARCH / Detector: CCD / Date: Oct 6, 2001 / Details: MIRRORS | ||||||||||||
Radiation | Monochromator: SI / Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | ||||||||||||
Radiation wavelength |
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Reflection | Resolution: 2→50 Å / Num. obs: 79319 / % possible obs: 95.9 % / Redundancy: 2 % / Biso Wilson estimate: 19.5 Å2 / Rmerge(I) obs: 0.058 / Net I/σ(I): 11.6 | ||||||||||||
Reflection shell | Resolution: 2.01→2.08 Å / Redundancy: 1.3 % / Rmerge(I) obs: 0.238 / Mean I/σ(I) obs: 2 / % possible all: 72.1 | ||||||||||||
Reflection | *PLUS Highest resolution: 2 Å | ||||||||||||
Reflection shell | *PLUS % possible obs: 72.1 % |
-Processing
Software |
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Refinement | Method to determine structure: MAD / Resolution: 2→47.14 Å / Cross valid method: THROUGHOUT / σ(F): 0
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Displacement parameters | Biso mean: 19.6 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 2→47.14 Å
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Refine LS restraints |
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Xplor file |
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Refinement | *PLUS Rfactor Rfree: 0.2188 / Rfactor Rwork: 0.1814 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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