[English] 日本語
Yorodumi
- EMDB-10223: Cryo-EM Structure of T. kodakarensis 70S ribosome -

+
Open data


ID or keywords:

Loading...

-
Basic information

Entry
Database: EMDB / ID: EMD-10223
TitleCryo-EM Structure of T. kodakarensis 70S ribosome
Map dataT. kodakarensis 30S body map
Sample
  • Complex: 70S ribosome from Thermococcus kodakarensisRibosome
    • RNA: x 3 types
    • Protein or peptide: x 58 types
  • Ligand: x 2 types
Function / homology
Function and homology information


ribonuclease P activity / tRNA 5'-leader removal / maturation of SSU-rRNA / maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / ribosomal large subunit biogenesis / maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / ribosomal small subunit biogenesis / small ribosomal subunit rRNA binding / ribosomal small subunit assembly / ribosomal large subunit assembly ...ribonuclease P activity / tRNA 5'-leader removal / maturation of SSU-rRNA / maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / ribosomal large subunit biogenesis / maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / ribosomal small subunit biogenesis / small ribosomal subunit rRNA binding / ribosomal small subunit assembly / ribosomal large subunit assembly / cytosolic small ribosomal subunit / large ribosomal subunit rRNA binding / ribosome biogenesis / small ribosomal subunit / 5S rRNA binding / cytoplasmic translation / cytosolic large ribosomal subunit / negative regulation of translation / tRNA binding / rRNA binding / ribosome / structural constituent of ribosome / translation / ribonucleoprotein complex / mRNA binding / RNA binding / zinc ion binding / cytosol / cytoplasm
Similarity search - Function
Small zinc finger protein HVO_2753-like, zinc-binding pocket / Small zinc finger protein HVO_2753-like / Small zinc finger protein HVO_2753-like, Zn-binding pocket / Ribosomal protein L14e / : / Ribosomal protein L40e, archaeal / : / Ribosomal protein S9, archaeal / Ribosomal protein S13, archaeal / Ribosomal protein S17, archaeal ...Small zinc finger protein HVO_2753-like, zinc-binding pocket / Small zinc finger protein HVO_2753-like / Small zinc finger protein HVO_2753-like, Zn-binding pocket / Ribosomal protein L14e / : / Ribosomal protein L40e, archaeal / : / Ribosomal protein S9, archaeal / Ribosomal protein S13, archaeal / Ribosomal protein S17, archaeal / Ribosomal protein S6e, archaeal / Ribosomal protein S4, archaeal / Ribosomal protein S12, archaea / Ribosomal protein S3, archaeal / 30S ribosomal protein S3Ae / Ribosomal protein S7, archaeal / Ribosomal protein S19e, archaeal / Ribosomal protein S11, archaeal / Ribosomal protein S2, archaeal / Ribosomal protein S14, type Z, archaeal / Ribosomal protein S8e, archaeal / Ribosomal protein L15e, archaeal / Ribosomal protein L30, archaeal / Ribosomal protein L6P, archaea / Ribosomal protein L14P, archaeal / Ribosomal protein L21e, archaeal / Ribosomal protein L18e, archaea / Ribosomal protein L10e, archaea / Ribosomal protein L32e, archaeal / Ribosomal protein L3, archaeal / Ribosomal protein L4, archaea / Ribosomal protein L5, archaeal / Ribosomal protein L7Ae, archaea / Ribosomal protein L24e / Ribosomal protein L30e / Ribosomal protein L2, archaeal-type / Ribosomal L15/L27a, N-terminal / Ribosomal protein L23 / metallochaperone-like domain / TRASH domain / Ribosomal protein S19e, conserved site / Ribosomal protein S10, eukaryotic/archaeal / Ribosomal protein S17e, conserved site / 40S ribosomal protein S29/30S ribosomal protein S14 type Z / Ribosomal protein S3, eukaryotic/archaeal / Ribosomal protein L10e, conserved site / Ribosomal protein L10e / Ribosomal protein S19A/S15e / Ribosomal protein S3Ae, conserved site / Ribosomal protein S17e / Ribosomal protein S17e-like superfamily / Ribosomal protein S19e / Ribosomal_S19e / Ribosomal protein S8e, conserved site / Ribosomal protein S5, eukaryotic/archaeal / Ribosomal protein L24e, conserved site / Ribosomal protein L34e, conserved site / Ribosomal protein S4e, N-terminal, conserved site / Ribosomal S17 / Ribosomal protein S19e signature. / Ribosomal protein L44e / Ribosomal protein S19e / Ribosomal protein S27, zinc-binding domain superfamily / Ribosomal protein S17, archaeal/eukaryotic / Ribosomal protein S27 / Ribosomal protein S28e conserved site / Ribosomal protein S6/S6e/A/B/2, conserved site / Ribosomal protein S28e / Ribosomal protein L30e, conserved site / Ribosomal protein S4e, N-terminal / Ribosomal protein S23, eukaryotic/archaeal / Ribosomal protein S3Ae / Ribosomal S3Ae family / Ribosomal protein L44 / Ribosomal protein L34Ae / Ribosomal protein S2, eukaryotic/archaeal / Ribosomal protein S8e / Ribosomal protein S4, KOW domain / Ribosomal protein S5/S7, eukaryotic/archaeal / Ribosomal protein S4e / Ribosomal protein S4e, central region / Ribosomal protein S4e, central domain superfamily / Ribosomal protein S6e / Ribosomal protein S13/S15, N-terminal / Ribosomal protein S15P / Ribosomal S13/S15 N-terminal domain / Ribosomal protein S6e / Ribosomal protein S4/S9, eukaryotic/archaeal / Ribosomal protein L30/YlxQ / RS4NT (NUC023) domain / Ribosomal protein L34e / Ribosomal protein L31e, conserved site / Ribosomal protein L37ae / Ribosomal protein S27 / Ribosomal S3Ae family / Ribosomal protein S17e signature. / Ribosomal protein S28e / Ribosomal protein L44e signature. / Ribosomal_L40e / Ribosomal protein L40e
Similarity search - Domain/homology
Small ribosomal subunit protein eS17 / Large ribosomal subunit protein uL23 / Large ribosomal subunit protein uL2 / Small ribosomal subunit protein uS19 / Large ribosomal subunit protein uL22 / Small ribosomal subunit protein uS3 / Large ribosomal subunit protein uL29 / Small ribosomal subunit protein uS17 / Large ribosomal subunit protein uL4 / Large ribosomal subunit protein uL16 ...Small ribosomal subunit protein eS17 / Large ribosomal subunit protein uL23 / Large ribosomal subunit protein uL2 / Small ribosomal subunit protein uS19 / Large ribosomal subunit protein uL22 / Small ribosomal subunit protein uS3 / Large ribosomal subunit protein uL29 / Small ribosomal subunit protein uS17 / Large ribosomal subunit protein uL4 / Large ribosomal subunit protein uL16 / Large ribosomal subunit protein uL3 / Small ribosomal subunit protein eS6 / Large ribosomal subunit protein eL43 / Small ribosomal subunit protein uS7 / Small ribosomal subunit protein uS12 / Large ribosomal subunit protein eL30 / Small ribosomal subunit protein eS27 / Large ribosomal subunit protein eL42 / LSU ribosomal protein L41E / Predicted zinc-ribbon RNA-binding protein involved in translation / Small ribosomal subunit protein uS10 / Small ribosomal subunit protein eS8 / Small ribosomal subunit protein uS15 / Small ribosomal subunit protein eS1 / Small ribosomal subunit protein eS19 / Large ribosomal subunit protein eL8 / Small ribosomal subunit protein eS28 / Large ribosomal subunit protein eL24 / Large ribosomal subunit protein eL20 / Large ribosomal subunit protein eL31 / Large ribosomal subunit protein eL39 / Large ribosomal subunit protein eL15 / Large ribosomal subunit protein eL21 / Large ribosomal subunit protein eL37 / Small ribosomal subunit protein eS24 / Small ribosomal subunit protein uS2 / Large ribosomal subunit protein eL40 / Small ribosomal subunit protein uS9 / Large ribosomal subunit protein eL14 / Small ribosomal subunit protein uS13 / Small ribosomal subunit protein uS4 / Small ribosomal subunit protein uS11 / Large ribosomal subunit protein eL18 / Large ribosomal subunit protein uL13 / Large ribosomal subunit protein eL34 / Large ribosomal subunit protein uL14 / Large ribosomal subunit protein uL24 / Small ribosomal subunit protein eS4 / Large ribosomal subunit protein uL5 / Small ribosomal subunit protein uS14 / Small ribosomal subunit protein uS8 / Large ribosomal subunit protein uL6 / Large ribosomal subunit protein eL32 / Large ribosomal subunit protein eL19 / Large ribosomal subunit protein uL18 / Small ribosomal subunit protein uS5 / Large ribosomal subunit protein uL30 / Large ribosomal subunit protein uL15
Similarity search - Component
Biological speciesThermococcus kodakarensis (archaea)
Methodsingle particle reconstruction / cryo EM / Resolution: 2.95 Å
AuthorsMatzov D / Sas-Chen A / Thomas JM / Santangelo T / Meier JL / Schwartz S / Shalev-Benami M
CitationJournal: Nature / Year: 2020
Title: Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping.
Authors: Aldema Sas-Chen / Justin M Thomas / Donna Matzov / Masato Taoka / Kellie D Nance / Ronit Nir / Keri M Bryson / Ran Shachar / Geraldy L S Liman / Brett W Burkhart / Supuni Thalalla Gamage / ...Authors: Aldema Sas-Chen / Justin M Thomas / Donna Matzov / Masato Taoka / Kellie D Nance / Ronit Nir / Keri M Bryson / Ran Shachar / Geraldy L S Liman / Brett W Burkhart / Supuni Thalalla Gamage / Yuko Nobe / Chloe A Briney / Michaella J Levy / Ryan T Fuchs / G Brett Robb / Jesse Hartmann / Sunny Sharma / Qishan Lin / Laurence Florens / Michael P Washburn / Toshiaki Isobe / Thomas J Santangelo / Moran Shalev-Benami / Jordan L Meier / Schraga Schwartz /
Abstract: N-acetylcytidine (acC) is an ancient and highly conserved RNA modification that is present on tRNA and rRNA and has recently been investigated in eukaryotic mRNA. However, the distribution, dynamics ...N-acetylcytidine (acC) is an ancient and highly conserved RNA modification that is present on tRNA and rRNA and has recently been investigated in eukaryotic mRNA. However, the distribution, dynamics and functions of cytidine acetylation have yet to be fully elucidated. Here we report acC-seq, a chemical genomic method for the transcriptome-wide quantitative mapping of acC at single-nucleotide resolution. In human and yeast mRNAs, acC sites are not detected but can be induced-at a conserved sequence motif-via the ectopic overexpression of eukaryotic acetyltransferase complexes. By contrast, cross-evolutionary profiling revealed unprecedented levels of acC across hundreds of residues in rRNA, tRNA, non-coding RNA and mRNA from hyperthermophilic archaea. AcC is markedly induced in response to increases in temperature, and acetyltransferase-deficient archaeal strains exhibit temperature-dependent growth defects. Visualization of wild-type and acetyltransferase-deficient archaeal ribosomes by cryo-electron microscopy provided structural insights into the temperature-dependent distribution of acC and its potential thermoadaptive role. Our studies quantitatively define the acC landscape, providing a technical and conceptual foundation for elucidating the role of this modification in biology and disease.
History
DepositionAug 15, 2019-
Header (metadata) releaseJul 29, 2020-
Map releaseJul 29, 2020-
UpdateDec 2, 2020-
Current statusDec 2, 2020Processing site: PDBe / Status: Released

-
Structure visualization

Movie
  • Surface view with section colored by density value
  • Surface level: 0.04
  • Imaged by UCSF Chimera
  • Download
  • Surface view colored by height
  • Surface level: 0.04
  • Imaged by UCSF Chimera
  • Download
  • Surface view with fitted model
  • Atomic models: PDB-6skf
  • Surface level: 0.04
  • Imaged by UCSF Chimera
  • Download
Movie viewer
Structure viewerEM map:
SurfViewMolmilJmol/JSmol
Supplemental images

emd_10223.png

Downloads & links

-
Map

FileDownload / File: emd_10223.map.gz / Format: CCP4 / Size: 421.9 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
AnnotationT. kodakarensis 30S body map
Voxel sizeX=Y=Z: 0.85 Å
Density
Contour LevelBy AUTHOR: 0.05 / Movie #1: 0.04
Minimum - Maximum-0.24538869 - 0.44123247
Average (Standard dev.)0.0003702157 (±0.011424991)
SymmetrySpace group: 1
Details

EMDB XML:

Map geometry
Axis orderXYZ
Origin000
Dimensions480480480
Spacing480480480
CellA=B=C: 408.0 Å
α=β=γ: 90.0 °

CCP4 map header:

modeImage stored as Reals
Å/pix. X/Y/Z0.850.850.85
M x/y/z480480480
origin x/y/z0.0000.0000.000
length x/y/z408.000408.000408.000
α/β/γ90.00090.00090.000
MAP C/R/S123
start NC/NR/NS000
NC/NR/NS480480480
D min/max/mean-0.2450.4410.000

-
Supplemental data

-
Additional map: T. kodakarensis 50S map

Fileemd_10223_additional_1.map
AnnotationT. kodakarensis 50S map
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

-
Additional map: T. kodakarensis 50S unsharpened map

Fileemd_10223_additional_2.map
AnnotationT. kodakarensis 50S unsharpened map
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

-
Additional map: T. kodakarensis 30S body unsharpened map

Fileemd_10223_additional_3.map
AnnotationT. kodakarensis 30S body unsharpened map
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

-
Additional map: T. kodakarensis 30S body unsharpened map

Fileemd_10223_additional_4.map
AnnotationT. kodakarensis 30S body unsharpened map
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

-
Additional map: T. kodakarensis 30S head map

Fileemd_10223_additional_5.map
AnnotationT. kodakarensis 30S head map
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

-
Additional map: T. kodakarensis 30S head unsharpened map

Fileemd_10223_additional_6.map
AnnotationT. kodakarensis 30S head unsharpened map
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

-
Sample components

+
Entire : 70S ribosome from Thermococcus kodakarensis

EntireName: 70S ribosome from Thermococcus kodakarensisRibosome
Components
  • Complex: 70S ribosome from Thermococcus kodakarensisRibosome
    • RNA: 16S rRNA
    • Protein or peptide: 30S ribosomal protein S2
    • Protein or peptide: 30S ribosomal protein S3
    • Protein or peptide: 30S ribosomal protein S3AeRibosome
    • Protein or peptide: 30S ribosomal protein S4
    • Protein or peptide: 30S ribosomal protein S4eRibosome
    • Protein or peptide: 30S ribosomal protein S5
    • Protein or peptide: 30S ribosomal protein S6eRibosome
    • Protein or peptide: 30S ribosomal protein S7
    • Protein or peptide: 30S ribosomal protein S8
    • Protein or peptide: 30S ribosomal protein S8eRibosome
    • Protein or peptide: 30S ribosomal protein S9
    • Protein or peptide: 30S ribosomal protein S10
    • Protein or peptide: 30S ribosomal protein S11
    • Protein or peptide: 30S ribosomal protein S12
    • Protein or peptide: 30S ribosomal protein S13
    • Protein or peptide: 30S ribosomal protein S15
    • Protein or peptide: 30S ribosomal protein S14 type ZRibosome
    • Protein or peptide: 30S ribosomal protein S17
    • Protein or peptide: 30S ribosomal protein S17eRibosome
    • Protein or peptide: 30S ribosomal protein S19
    • Protein or peptide: 30S ribosomal protein S19eRibosome
    • Protein or peptide: 30S ribosomal protein S24eRibosome
    • Protein or peptide: 30S ribosomal protein S27eRibosome
    • Protein or peptide: 30S ribosomal protein S28eRibosome
    • Protein or peptide: Predicted zinc-ribbon RNA-binding protein involved in translation
    • RNA: 23S rRNA23S ribosomal RNA
    • RNA: 5S rRNA5S ribosomal RNA
    • Protein or peptide: 50S ribosomal protein L2
    • Protein or peptide: 50S ribosomal protein L3
    • Protein or peptide: 50S ribosomal protein L4
    • Protein or peptide: 50S ribosomal protein L5
    • Protein or peptide: 50S ribosomal protein L6
    • Protein or peptide: 50S ribosomal protein L7AeRibosome
    • Protein or peptide: 50S ribosomal protein L10eRibosome
    • Protein or peptide: 50S ribosomal protein L13
    • Protein or peptide: 50S ribosomal protein L14
    • Protein or peptide: 50S ribosomal protein L14eRibosome
    • Protein or peptide: 50S ribosomal protein L15
    • Protein or peptide: 50S ribosomal protein L15eRibosome
    • Protein or peptide: 50S ribosomal protein L18
    • Protein or peptide: 50S ribosomal protein L18eRibosome
    • Protein or peptide: 50S ribosomal protein L19eRibosome
    • Protein or peptide: 50S ribosomal protein L18AeRibosome
    • Protein or peptide: 50S ribosomal protein L21eRibosome
    • Protein or peptide: 50S ribosomal protein L22
    • Protein or peptide: 50S ribosomal protein L23
    • Protein or peptide: 50S ribosomal protein L24
    • Protein or peptide: 50S ribosomal protein L24eRibosome
    • Protein or peptide: 50S ribosomal protein L29
    • Protein or peptide: 50S ribosomal protein L30
    • Protein or peptide: 50S ribosomal protein L30eRibosome
    • Protein or peptide: 50S ribosomal protein L31eRibosome
    • Protein or peptide: 50S ribosomal protein L32eRibosome
    • Protein or peptide: 50S ribosomal protein L34eRibosome
    • Protein or peptide: 50S ribosomal protein L37AeRibosome
    • Protein or peptide: 50S ribosomal protein L37eRibosome
    • Protein or peptide: 50S ribosomal protein L39eRibosome
    • Protein or peptide: 50S ribosomal protein L40eRibosome
    • Protein or peptide: LSU ribosomal protein L41E
    • Protein or peptide: 50S ribosomal protein L44eRibosome
  • Ligand: ZINC ION
  • Ligand: water

+
Supramolecule #1: 70S ribosome from Thermococcus kodakarensis

SupramoleculeName: 70S ribosome from Thermococcus kodakarensis / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1-#61
Source (natural)Organism: Thermococcus kodakarensis (archaea)

+
Macromolecule #1: 16S rRNA

MacromoleculeName: 16S rRNA / type: rna / ID: 1 / Number of copies: 1
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 488.234531 KDa
SequenceString: AUUC(4AC)GG(OMU)UG AUCCUGCCGG AGGCCACUGC UAUGGGGGUC (4AC)GACUAAGCC A(OMU)GCGAGUCA UGGG GCGCG CUCUGCGCGC ACCGGCGGAC GGCUCAGUAA CACGUCGGUA ACCUACCCUC GGGAGGGGGA UAACCC(4AC)G (OMG) GAAACUGGGG ...String:
AUUC(4AC)GG(OMU)UG AUCCUGCCGG AGGCCACUGC UAUGGGGGUC (4AC)GACUAAGCC A(OMU)GCGAGUCA UGGG GCGCG CUCUGCGCGC ACCGGCGGAC GGCUCAGUAA CACGUCGGUA ACCUACCCUC GGGAGGGGGA UAACCC(4AC)G (OMG) GAAACUGGGG CUAAUCCCCC AUAGGCCUGA GGUACUGGAA GGUCCUCAGG C(OMC)GAAAGGGG CAUCUGCCCG C CCGAGGAU GGGCCGGCGG C(LHH)GAUUAGGU AG(OMU)UGGUG(OMG)G GUAACGGCCC ACCAAGCCGA AGAUCGGUAC GGGCCAUGA GAGUGGGAG(OMC) C(4AC)GGAGA(OMU)GG ACACUGAGAC ACG(OMG)GUCCAG GCCCUACGGG GCGCA GCAG GCGCGA(A2M)ACC UC(4AC)GCAAUGC GGGCAAC(4AC)GC GACGG(OMG)(OMG)GGA CCCCCAGUGC CGUGGC AUA GCCACGGCUU UUCCGGAGUG UAAAAAGCUC CGGGAAUAAG G(OMG)CUG(OMG)GCAA GG(5MC)(4AC)GGUGG (5MC)AGCCGCCGC GGUAA(OMU)ACCG GCGGCCCGAG UGGU(OMG)GC(4AC)GC UAUUAUUGGG CCUAAAGCGU C (4AC)GUAGCC(OMG) GG(OMC)CCGUAAG UCCCUGGCGA AAUCCCACGG CUCAAC(4AC)GUG GGGCUUGCUG GGGAUA CUG CGGGCCUUGG GAC(4AC)GGGAGA GGCCGGGGGU ACCCCUGGGG UAGG(OMG)GUGAA AUCCUAUAAU CCCAGGG (OMG)G ACCGCCAGU(2MG) G(5MC)GAAGGCGC C(4AC)GGCUGGAA CGGGUC(4AC)GAC GGUGAGGGAC GAAGGCCA G GGGAGCGAAC (4AC)GGAUUAGAU ACCCGGGUAG UC(OMC)UGGCUGU AAAGGAUGCG G(OMG)CUAGGUGU CGGGCGA GC UUCGAGCUCG CCCGGUGCCG GAGGGAAGC(4AC) GUUAAG(OMC)C(4AC)G CCGCCUGGGG AGUACGGC(4AC)G CA A(OMG)G(5MC)UGA AACUUAAAGG AAUUGGCG(OMG)G GGAGCACUAC AAGG(OMG)GUGGA GCGUGCGGUU UAAUU (OMG)GAU (5MU)(LV2)AACGCCGG GAACCUCACC GGGGG(5MC)GACG GCAGGAUGAA GGCCAGGCUG AAGGUCUUGC CGGACACGC CGAGAGGA(OMG)G UGCAUGGC(5MC)G C(4AC)GUCAGCUC GUAC(LHH)GUGA(OMG) (OMG)CGUCCA CU UAAGUGUGGU AACGAG(B8T)GAG ACCCGCGCCC CCAGUUGCCA GUCCUCCCCG CUGGGGAGGA GGCACUCUGG GG (OMG)GACCGC CGGCGAUAAG CCGGAGGAAG GAGCGGG(B8T)GA CGGUAGGUCA GUAUGCCCCG AAACCCCCGG GCUAC ACGC GCGCUACAAU GGGCGGGACA AUGGGAUCCG ACCC(4AC)GAAAG GGGAAGGGAA UCCCCUAAAC CCGCCCUCAG UU CGGAUCG (B8T)GG(OMG)CUGCAA CUC(OMG)(5MC)CCGCG UGAAGCUGGA AUCCCUAGUA CCCGCGUGUC AUCAUCG CG CGGCGAAUAC GUCCCUGCUC CUUGCACACA C(5MC)G(OMC)CCG(OMU)CA (OMC)UCCACCCGA GCGGGGUCCG GG UGAGGCC UGGUCUCCCU UCGGGGAGGC CGGGUCGAGC CUGGGCUCCG UGAG(OMG)GGGGA GAAGUCGUA(6MZ) CAAGG UAGC (4AC)GUAGGGG(MA6)(MA6) CCUACGG(5MC)U(5MC) GAUCACCUCC UAUCGCCGGA

+
Macromolecule #27: 23S rRNA

MacromoleculeName: 23S rRNA / type: rna / ID: 27 / Number of copies: 1
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 990.337312 KDa
SequenceString: AACGUCCCGC CCGGUGGCAA CUAAGC(4AC)GCC UGG(OMU)GGAUGG CUCGGCUCGG GGCGC(4AC)GACG AA(OMG) (OMG)GCGUG GCAAGCUGCG AUAAGCCCCG GCGAGGCGCA GGCAGCCGUC GAACCGGGGA UGCC(4AC)GAAUG GGACCU CCC GCGGCUUUUG ...String:
AACGUCCCGC CCGGUGGCAA CUAAGC(4AC)GCC UGG(OMU)GGAUGG CUCGGCUCGG GGCGC(4AC)GACG AA(OMG) (OMG)GCGUG GCAAGCUGCG AUAAGCCCCG GCGAGGCGCA GGCAGCCGUC GAACCGGGGA UGCC(4AC)GAAUG GGACCU CCC GCGGCUUUUG CCGCACUCCC AGUCGGGAGG GGGAACGCGG GGAAUUGAAA CAUCUUAGUA CC(4AC)GCAGGAA AAG (A2M)AA(OMG)CA AAAGCGAUGC CGUUAGUAGG GGCGAC(4AC)GAA AG(OMC)GGCACAG GGCAAACUGA ACCCCGGG C CGAAAGGUUC GGG(OMG)GAUGUG G(5MU)GUUGUAGG GCCCGCGGAG GAGCCCUGGG GGCGAAGC(4AC)G AAGUCCG CU GGAACGC(OMG)GC G(B8T)CGGAGAG(OMG) GUGAAAGCCC (4AC)GUAGGCGUA AGCCCCCGAG CUCCUGCGGU GU CCCUGAG UAC(4AC)(OMG)UCGGU CGGAUAUC(4AC)G GCGGGAAGCU GGGAGGCA(OMU)C GGCUCCCAAC CCUAAAU AC GUCCCGAGAC CGAU(A2M)GCGAA CUAGUAC(4AC)GU G(A2M)GGGAAAGC UGAAAAGCAC CC(LHH)GGGAGGG GG G(5MU)GAAAA GAGCCUGAA(OMG) CCAGGCGG(OMC)G AUAGGAGGG(5MU) GC(OMG)GCCCGAA AGGGUUGACC CUC CCCGAA GGAAACACGG GCGAC(LHH)G(OMU)GG AGUACGAGGG GAGGUGACCG GGGUUGCACC GUCCG(OMU)CUUG GA UCACGGG GCA(OMG)GGAGUU CACCCGAGCG GCGAGGUUAA GGGGGUCAAC CC(4AC)GAAG(OMC)CG CA(OMG)GGAA AC (4AC)GACAGGUCC GCAGCCCGUA AGGG(OMC)G(A2M)GGG ACG(OMG)GGUG(OMU)G AAAGCGCC(4AC)G GAGU CGCUC GGGUGAGACC (4AC)(OMG)AAGC(4AC)GGU CGAUCUAGCC CGGGGC(A2M)GGG UGAA(OMG)UCCCU CAACA GAGG G(A2M)UGGAGGCC (4AC)GCUAGGGGU G(OMC)UG(A2M)CG(5MU)GC A(A2M)UUCGCUCC CGUGACCCCG GG CUAGGGG UGAAA(OMG)GCCA AUCGAGGC(4AC)G GCGAU(A2M)GCUG GUUCCCG(5MC)CG AAUUAUCCCC CAGGAUA GC CCGGCCGGAG GUAGGCAGUG GGGUAGAGCA CUGAUUGGGG GUUUAGGGGG CGAAAGCCUC CGGCUCCCUG UCAAACUC C GAACCCACUG CCGCCGUAGA UGGCCGGAGU AGGGGGGCGG (5MU)GUAAGCCGU CACCCGAGAG G(OMG)GAACAACC C AGACCGGG GUUAAGGCCC CAAAGUGCCG GCUAAGUGUU ACUCCAAAGG GUGUCCCUGG CCUUAGACAG CGGGGAGGUA GG CUUAGAA GCAGCCAUCC UUUAAAGAGU GCGUAACAGC UCACCCGUCG AGGUCAGGGG CCCCGAAAAU GG(A2M)CGGGGC UUAAGCCGGC CGCCGAGACC CCGGCGCACG GAC(4AC)GAUUGG UCCGUGA(OMU)CG GGUAGGCGGG CGUGC(4AC)GA (OMU) GGGGCGGAAG CCGGGC(4AC)GUG AGGUCCGGUG GACC(4AC)GUCGG UAUUGCGGAU CCUGC(4AC)G(OMG)G (A2M)GUAGCAGCA UAGCCGGGUG AGAAUCC(4AC)GG C(4AC)GC(4AC)GUAGG GGCCAGGGUU CCACGGCAAU GUUC GUCAG C(4AC)GUGGGUUA G(OMU)CGGUCCUA ACCCGACCCG UAACUCGGCG UCGGGGAA(A2M)G GGAAAC(OMG)GG UUUAUAUUCC CGUAC(4AC)GCGG (5MU)GG(OMU)AGGUGC (OMG)GCAACGCAA GCCCGAGGGG UGACGCCUCG GGGU AGGCG GACCGGUCCA CAAGGCCGGC UAAGCGUAUA AGCCCGGGGA GUGC(4AC)GUAAU GGCGAGAACC GGGUGAAAGC G CGAAUGGC CUCCCGUAAG GGGGGUUCCG (5MC)CGAUCCCUG GGGCCCGUGA AAAGCCCCUC GGGAACGAUC CACCGCGA C CGUAC(OMC)GAGA ACCGACACUG GUGCCCCUGG G(OMU)GAGAAGCC UAAGG(OMC)GUGU CGGG(OMG)GAAAC CCA GC(4AC)GAG GGAACU(OMC)GGC AAAUUGGCCC CGUAACUUCG GGAGAAGGGG UGCCUGCGGG UGUGUAACCC GCAGGU CGC AGUGACUAG(OMG) GGGGCC(4AC)GAC UG(5MU)UUAGUAA AAACACAGGU CCCAGCUAGC C(4AC)GAAAG (OMG)G UUUGUACUGG G(OMG)C(4AC)GACGCC UGC(5MC)CAG(OMU)GC CGGUAUGUGA AGCCCGGGUA CAACCGGG U GAAGCACCG(OMG) UAAAC(OMG)G(OMC)(OMG)G GGGUAACUAU AACC(5MC)UCUUA AGGUAG(OMC)GAA AUUC (5MC)UUGU CGGUUAAAUG (5MC)CGAC(5MC)UGCA UGAAUGGCGU AACGAGGUCC CCACUGUCCC CGGCUGGGGC C (4AC)GG(OMC)GAAA CCUCUGCCAG GCGCAUAUGC CUG(OMG)GACCUC (4AC)GGUGGGAA(OMG) CGAAGACCCC AU GGAGCUU UACUGCAGCC UGCCGUUGCC GUACGGCGGG GGGUGCGCAG CGUAGGCGGG AGGCGUCGAA GCCCGCCCUC CGG GGCGGG UGGAGCCGCC CAUGAGACAC CGCCCACCCU CUGCCGUACG GCUAACCCGC GGAAGCG(OMG)GG ACAGCGGUAG GUGGGCAGU UUGGCUG(OMG)GG CGGCACACCC UCGAAAAGGU AUC(OMG)AGGG(5MU)G CCC(OMU)AAGGUC GGCUC AGGC GGGUCAGGAA UCCGCCGUAG AGUGCAAGGG CAAAAGCCGG CCUGACUGGA CC(LHH)GUAACAG AGGCGGGUCC AG CCGCGAA AGCGUGGCCU AGCGAACCCC UGUGCCUCCC CGGUGGG(OMG)GC CAG(OMG)(OMG)AUGAC AGAAAAGC (OMU) AC(OMC)CUGG(OMG)GA (4SU)AACAGAGUC GUCUC(OMG)GG(OMC)G AGAGCCCA(4SU)A UCGACCC (4AC)G AGG(OMC)UUGCUA CCU(5MC)GCUG(OMU)C GGCUCUUCCC AUCCUGGC(OMC)C UGCAGCAGGG GCCAAGGG U GGGGG(OMU)(OMG)UUC ACCCAUUAAA G(OMG)GGAACGUG AGCUGGG(5MU)UU AGACCGUCGU G(A2M)GACAGGU CGGAUGCUAU CUACCGGA(OMG)G UGUUGGCCGC CUGAG(OMG)GGAA GGCUCCCCCA GUACGAGAGG AACAGGGAGC (4AC)GCGGCCUC UGGUCUAC(4AC)G GUUGUCCUAC AGGGCAUAGC CGGGCAGCUA CGC(4AC)GCAGC(4AC) GAUAA GGCC UGAAAGCAUC UAAGG(5MC)CGAA GCGGCCCCCG AAAACAGGCG GCCACUCCUG GGCGUUGGGC CUGGGCGACC GG UCCGUUG CCCAGGACGA GGGCCCGGGA AGAAGACC(LHH)G GUUGAUGGGG CGGGGAUGUA AGCGGGAAGG GAAAC (4AC)GAC C(4AC)GUUCAGUC UGC(4AC)GCUCCC AACAGCC(4AC)GA GUGCUACCGG GC

+
Macromolecule #28: 5S rRNA

MacromoleculeName: 5S rRNA / type: rna / ID: 28 / Number of copies: 1
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 40.744309 KDa
SequenceString:
GGUACGGCGG CCAUAGCGGC GGGGCCACAC CCGGUCUCGU UUCGACCCCG GAAGUUAAGC CCGCCAGCGU UCCCGGGUGU ACUGCCCUC CGAGAGGGGG CGGGAAACCG GGAACGCCGC CGGCCAC

+
Macromolecule #2: 30S ribosomal protein S2

MacromoleculeName: 30S ribosomal protein S2 / type: protein_or_peptide / ID: 2 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 23.039793 KDa
SequenceString: MEEYLVPLDQ YLAAGVHIGT QQKTKDMKKF IYRVRQDGLY VLDVRKTDER LRVAGKFLAK FDPESILAVS VRLYGQRPVK KFGEVTGAK AIPGRFLPGT MTNPQVKNFI EPDVLIVTDP RADHQALKEA VEIGIPIVAL VDTENFLSYV DIAIPTNNKG R KALALIYW ...String:
MEEYLVPLDQ YLAAGVHIGT QQKTKDMKKF IYRVRQDGLY VLDVRKTDER LRVAGKFLAK FDPESILAVS VRLYGQRPVK KFGEVTGAK AIPGRFLPGT MTNPQVKNFI EPDVLIVTDP RADHQALKEA VEIGIPIVAL VDTENFLSYV DIAIPTNNKG R KALALIYW ILAREVLYNR KEIESREDFK IPVEDFEMRI IRT

+
Macromolecule #3: 30S ribosomal protein S3

MacromoleculeName: 30S ribosomal protein S3 / type: protein_or_peptide / ID: 3 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 23.39016 KDa
SequenceString: MAIERYFIKE GVKEMLIDEF LEKELRRAGY GGLDIKKTPL GTKVTIFAAN PGYVIGRGGR RIRELTRILE KQFGLENPQI EVEEIKNPY LNAKVQAVRL AQALERGIHF RRAAYSAIRA IMRNGARGVE IRLSGKLTGE RAKSVRFYQG YLAKVGNPAE T LVSRGYAQ ...String:
MAIERYFIKE GVKEMLIDEF LEKELRRAGY GGLDIKKTPL GTKVTIFAAN PGYVIGRGGR RIRELTRILE KQFGLENPQI EVEEIKNPY LNAKVQAVRL AQALERGIHF RRAAYSAIRA IMRNGARGVE IRLSGKLTGE RAKSVRFYQG YLAKVGNPAE T LVSRGYAQ AQLKLGVIGV KVSIMPPDAK LPDEIEIKEI VEEEVSANEA Q

+
Macromolecule #4: 30S ribosomal protein S3Ae

MacromoleculeName: 30S ribosomal protein S3Ae / type: protein_or_peptide / ID: 4 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 23.06492 KDa
SequenceString: MARGNPRKRA AAAKDKWKMK EWYIVYAPDF FGSKEIGLTP ADDPEKVIGR VIETTLKDLT GDFTKGHVKL YFQVYDVKGQ NAYTKFKGH TLARSYIRSL VRRRTTRVDG IFNITTKDGY KLRVMGMVIA YRRIQTSQER AIRKIIQDII YKKAEELNFA D FVLQSVNG ...String:
MARGNPRKRA AAAKDKWKMK EWYIVYAPDF FGSKEIGLTP ADDPEKVIGR VIETTLKDLT GDFTKGHVKL YFQVYDVKGQ NAYTKFKGH TLARSYIRSL VRRRTTRVDG IFNITTKDGY KLRVMGMVIA YRRIQTSQER AIRKIIQDII YKKAEELNFA D FVLQSVNG QIASEIAKEA RKIYPIKRAE VRKIKVLAEP SA

+
Macromolecule #5: 30S ribosomal protein S4

MacromoleculeName: 30S ribosomal protein S4 / type: protein_or_peptide / ID: 5 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 21.240621 KDa
SequenceString:
MGDPKRQRKK YETPSHPWIK ERLDRERVLK RNYALKNKKE LWRHETQLKE FRRRARRLLA ARGKQAEIER QQLLQRLYRL GLLPADAVL DDVLSLTVED VLERRLQTIV YRKGLARTMK QARQLIVHGH IEVNGQVIRS PGYLVLREEE DTITYAKGSP F AKEGHPER MVIEQAKQGG EA

+
Macromolecule #6: 30S ribosomal protein S4e

MacromoleculeName: 30S ribosomal protein S4e / type: protein_or_peptide / ID: 6 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 27.820629 KDa
SequenceString: MARKGPKRHL KRLAAPTSWY IHRKAYKWAV RPSPGPHSMK TSIPLIYIVR DYLGYAKTAR EARKILNEGK ILVDGRVRKD YKFPVGIMD VVSIPETGEH YRVLPNRIGK LILHPISEEE AKLKPFRINN KRMVKGAKVQ LNLHDGSNHL VSLAEKDAYK T SYTVIMQV ...String:
MARKGPKRHL KRLAAPTSWY IHRKAYKWAV RPSPGPHSMK TSIPLIYIVR DYLGYAKTAR EARKILNEGK ILVDGRVRKD YKFPVGIMD VVSIPETGEH YRVLPNRIGK LILHPISEEE AKLKPFRINN KRMVKGAKVQ LNLHDGSNHL VSLAEKDAYK T SYTVIMQV PERQIVKVLP FEVGAYVFVT QGKNVARKGK IVEVRQFPMG WPDVVTIEDE NGELFDTLKE YAFVIGKDKP EI SLP

+
Macromolecule #7: 30S ribosomal protein S5

MacromoleculeName: 30S ribosomal protein S5 / type: protein_or_peptide / ID: 7 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 26.372613 KDa
SequenceString: MSDPREIAQR VLEEWEPKTK LGRLVKEGQI TDIHEIFRKG YQIKEPEIVD VLLPEVNLRE NQEVLDIALT VRMTDSGRRI RFRVLAAVG NRDGYVGLGI GHGREVGIAI RKAINYAKMN IIEIKRGCGS WECRCRRPHS IPFAVEGKEG SVRVKLMPGP R GLGLVIGD ...String:
MSDPREIAQR VLEEWEPKTK LGRLVKEGQI TDIHEIFRKG YQIKEPEIVD VLLPEVNLRE NQEVLDIALT VRMTDSGRRI RFRVLAAVG NRDGYVGLGI GHGREVGIAI RKAINYAKMN IIEIKRGCGS WECRCRRPHS IPFAVEGKEG SVRVKLMPGP R GLGLVIGD VGKKILTLAG VQDVWSQTLG ETRTTVNFAK AVFNALYNTN RVAIKPEDIE RYGIVVGRAM PTTFEVE

+
Macromolecule #8: 30S ribosomal protein S6e

MacromoleculeName: 30S ribosomal protein S6e / type: protein_or_peptide / ID: 8 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 13.760986 KDa
SequenceString:
MATFKLVISN PKNGVAKQVE ISGPEADKLI GRRIGEEIPA SELGLNLSEI FGEEIPADAK LKITGGTDKD GFPMRPDVHG PRRVKILLS RGPGFRPRER GERRKKTVHG NTISPNIVQV NMKIVF

+
Macromolecule #9: 30S ribosomal protein S7

MacromoleculeName: 30S ribosomal protein S7 / type: protein_or_peptide / ID: 9 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 24.573713 KDa
SequenceString: MAKPLTERFF IPKEVKVMGR WSVEDVTVED PSLKPYINLD ARILPHSHGR YAKKPFGKAN VHIVERLINK VMRSGASHYK AGGHFMRRE HRSIMSKKMK AYEVVKEAFM IIERRTKQNP IQVLVKAIEN SAPREDTTTI AFGGIRYHMS VDVSPLRRLD I ALKNIALG ...String:
MAKPLTERFF IPKEVKVMGR WSVEDVTVED PSLKPYINLD ARILPHSHGR YAKKPFGKAN VHIVERLINK VMRSGASHYK AGGHFMRRE HRSIMSKKMK AYEVVKEAFM IIERRTKQNP IQVLVKAIEN SAPREDTTTI AFGGIRYHMS VDVSPLRRLD I ALKNIALG ASIKCYRNKT TYAQALAEEI IAAANKDPKS FAYSKKEEIE RIAQSSR

+
Macromolecule #10: 30S ribosomal protein S8

MacromoleculeName: 30S ribosomal protein S8 / type: protein_or_peptide / ID: 10 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 14.602109 KDa
SequenceString:
MTLLDPLANA LSHITNSERV GKKEVYIKPA SKLIGEVLRV MLENGYIGEF ELIDDGRAGI YRVQLIGKIN KAGAIKPRFP VKARDYEKW EKRFLPAFEF GILIVSTSQG VMTHKEALEK GIGGRLIAYV Y

+
Macromolecule #11: 30S ribosomal protein S8e

MacromoleculeName: 30S ribosomal protein S8e / type: protein_or_peptide / ID: 11 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 14.548031 KDa
SequenceString:
MAIWQGRSLK KPSGGRIILA RKKRKRELGR EPANTKVGED REKRKIIRTY GGNRKVRLVE ALYANVFEGG KGKKVKILNV VENPANRQY ARRNIITKGA IIETEIGKAI VTSRPGQDGV VNAVLIKEEN A

+
Macromolecule #12: 30S ribosomal protein S9

MacromoleculeName: 30S ribosomal protein S9 / type: protein_or_peptide / ID: 12 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 15.358943 KDa
SequenceString:
MRVIQTAGKR KTAVARATIR EGKGRVRINH KPVEIIEPEI ARFTIMEPLI LAGEEIVSRV DIDVKVEGGG FMGQAEAARV AIARALVEW TNDMNLKEKF MKYDRTMLVG DSRRTEPHKP NRSTKGPRAK RQKSYR

+
Macromolecule #13: 30S ribosomal protein S10

MacromoleculeName: 30S ribosomal protein S10 / type: protein_or_peptide / ID: 13 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 11.716666 KDa
SequenceString:
MQKARIKLAS TNIKALNEVT DQIKQIAERT GVRMSGPIPL PTKRIRITTR KSPDGEGSAT FDRFELRVHK RLVDIEADER AMRQIMRIR VPEDVTIEIE LIS

+
Macromolecule #14: 30S ribosomal protein S11

MacromoleculeName: 30S ribosomal protein S11 / type: protein_or_peptide / ID: 14 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 15.111241 KDa
SequenceString:
MSEEQTTQVN IKKKEKWGVA HIYSSYNNTI IHITDLTGAE TISRWSGGMV VKADRDEPSP YAAMIAARRA AEEAMEKGIT GVHIKVRAP GGSKSKSPGP GAQAAIRALS RAGLRIGRVE DVTPIPHDGT RPKGGRRGRR V

+
Macromolecule #15: 30S ribosomal protein S12

MacromoleculeName: 30S ribosomal protein S12 / type: protein_or_peptide / ID: 15 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 16.488537 KDa
SequenceString:
MAGKKAPYGE FAGRKLKLKR KKFRWSDIRY KRRVLRLKEK SDPLEGAPQA RGIVLEKIAV EAKQPNSAMR KAVRVQLIKN GKVVTAFTP GDGAINHIDE HDEVIIEGIG GPKGGSMGDI PGIRYKVVKV NRVSLKELVK GRKEKPRR

+
Macromolecule #16: 30S ribosomal protein S13

MacromoleculeName: 30S ribosomal protein S13 / type: protein_or_peptide / ID: 16 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 17.025875 KDa
SequenceString:
MTENFRHIVR VAGVDIDGHK QVRWALTGIK GIGINFATMV LRVAGIDPFM KAGYLTDEQV KKIEEILADP VAHGIPAWAV NRPKDYETG KDMHLITAKL VMAWREDVNR LRRIRAYRGI RHELGLPVRG QRTRSNFRHG TTVGVSRRKK

+
Macromolecule #17: 30S ribosomal protein S15

MacromoleculeName: 30S ribosomal protein S15 / type: protein_or_peptide / ID: 17 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 17.583785 KDa
SequenceString:
MARIHARKRG KSGSKRPPRT APPAWVEYTA EEVEALVVKL RKEGYSTAMI GTILRDQYGI PSVKLITGKK ITKILEENGL APEIPEDLM FLIRRAVNLR KHLEQHPKDK HSRRGLQLIE SKIRRLVKYY RRTGKLPAKW RYDPEQAKLL VR

+
Macromolecule #18: 30S ribosomal protein S14 type Z

MacromoleculeName: 30S ribosomal protein S14 type Z / type: protein_or_peptide / ID: 18 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 6.634088 KDa
SequenceString:
MAKADYNKRK PRKFGKGARR CMRCGQYGPI IRIHGLMLCR HCFREVAPKL GFKKYE

+
Macromolecule #19: 30S ribosomal protein S17

MacromoleculeName: 30S ribosomal protein S17 / type: protein_or_peptide / ID: 19 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 13.219385 KDa
SequenceString:
MREIGLRVQP PAEVCNDPKC PWHGNLKIHG RYVEGIVVSD KGKKTVVVER QYYHYLKKYE RYELRKSKVH AHNPECINAK VGDKVLIAE TRPISKTKSW VVVAVLQRAE RAEEV

+
Macromolecule #20: 30S ribosomal protein S17e

MacromoleculeName: 30S ribosomal protein S17e / type: protein_or_peptide / ID: 20 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 8.036431 KDa
SequenceString:
MGNIKQTFIK RTARELFDRY PDKFTRDFEH NKKMVAELTN VTSKTIRNRI AGYITRLVRM KEEGKIL

+
Macromolecule #21: 30S ribosomal protein S19

MacromoleculeName: 30S ribosomal protein S19 / type: protein_or_peptide / ID: 21 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 15.453374 KDa
SequenceString:
MARKKEFRYR GYTLDELLNM SLEEFAKLLP SRQRRSLKRG LSPEQKKLLR KIRLAKKGKY NKPIRTHSRD MIVLPEMVGM TIHVYNGKE FVPVEIKEEM IGHYLGEFAM TRKVVQHGSP GVGATRSSMF VAVK

+
Macromolecule #22: 30S ribosomal protein S19e

MacromoleculeName: 30S ribosomal protein S19e / type: protein_or_peptide / ID: 22 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 17.303977 KDa
SequenceString:
MATVYDVPGD LLVERVAKAL KEVPEIKPPE WAPFVKTGRH KERLPEQEDW WYYRVASVFR KVYIDGPVGI ERLRTWYGGR KNRGHAPEH FYKAGGSIIR KALQQLEAAG FVQKVPGEGR IVTPKGQSFL DKIATELKKE LEEQIPELKK Y

+
Macromolecule #23: 30S ribosomal protein S24e

MacromoleculeName: 30S ribosomal protein S24e / type: protein_or_peptide / ID: 23 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 11.458116 KDa
SequenceString:
MEIKVTEIRE NKLLGRKEIY FDVLHEGEPT PSREAVKGKL VAMLDLDPNT TVIQYIRSYF GSNVSKGYAK AYETRERMLY IEPEYILVR DGLVQKQEE

+
Macromolecule #24: 30S ribosomal protein S27e

MacromoleculeName: 30S ribosomal protein S27e / type: protein_or_peptide / ID: 24 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 7.085514 KDa
SequenceString:
MALPKNLIPM PRSRFLRVKC IDCGNEQIVF SHPATPVRCL VCGATLVEPT GGKGIIKAKV LEVEE

+
Macromolecule #25: 30S ribosomal protein S28e

MacromoleculeName: 30S ribosomal protein S28e / type: protein_or_peptide / ID: 25 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 7.971244 KDa
SequenceString:
MSDEGYPAEV IEIVGRTGVT GGVTQVKVRI LEGRDKGRVI RRNVKGPVRV GDIVILRETE REAREIRRRR

+
Macromolecule #26: Predicted zinc-ribbon RNA-binding protein involved in translation

MacromoleculeName: Predicted zinc-ribbon RNA-binding protein involved in translation
type: protein_or_peptide / ID: 26 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 7.001247 KDa
SequenceString:
MFAVEMKFEV PVCTSCGKEI TPREHATHFV CPNCGEAIIW RCESCRVLSV PYKCPKCGWE GP

+
Macromolecule #29: 50S ribosomal protein L2

MacromoleculeName: 50S ribosomal protein L2 / type: protein_or_peptide / ID: 29 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 26.092432 KDa
SequenceString: MGKSLIQQRR GKGTTTFRAP SHRYRGAVRY VPLNLVQERT LRGVVEEILH DPGRTAPVAR VKFEDGTKKL IIAPEGVLVG QEIYIGPEA PIAIGNTLPL AKIPEGTYVY DIEGVPGDGG KYVRAGGTYA LVVSREKDKV IVQLPSGELK AFNPMCRATI G VVAGGGRL ...String:
MGKSLIQQRR GKGTTTFRAP SHRYRGAVRY VPLNLVQERT LRGVVEEILH DPGRTAPVAR VKFEDGTKKL IIAPEGVLVG QEIYIGPEA PIAIGNTLPL AKIPEGTYVY DIEGVPGDGG KYVRAGGTYA LVVSREKDKV IVQLPSGELK AFNPMCRATI G VVAGGGRL EKPIVKAGKA YYIAKARNRF WPKPRGVKMN AVNHPHGGKE HHIGRPSTVS RRAPPGRKVG HIAARRTGRR K

+
Macromolecule #30: 50S ribosomal protein L3

MacromoleculeName: 50S ribosomal protein L3 / type: protein_or_peptide / ID: 30 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 39.118637 KDa
SequenceString: MGKIHRPRRG SLAYSPRKRA KSIVPRIRSW PKDSEVRMLG FAGYKAGMTH ILMIDDSPGL TKGKEIFVPV TIVEVPPLFV YGIRAYKQG YLGLETATEV WFHDLHKNVA RRIKTLPKNY NEEAFQAKLG QLEDLVNDGE IADVRLLVHT QPWLIGLKKK P EVMEYAIG ...String:
MGKIHRPRRG SLAYSPRKRA KSIVPRIRSW PKDSEVRMLG FAGYKAGMTH ILMIDDSPGL TKGKEIFVPV TIVEVPPLFV YGIRAYKQG YLGLETATEV WFHDLHKNVA RRIKTLPKNY NEEAFQAKLG QLEDLVNDGE IADVRLLVHT QPWLIGLKKK P EVMEYAIG GDDVKAKFDY AKEKIGKELR AGEVLHEGEL LDVIAVTKGK GTQGPVKRWG VKVQFHKAQR AGKGRHIGNL GP WHPARVM WTVPQAGQMG FHHRTEFNKR LIAIGENGKL VLDGNEIEIT PKGGFPHYGI VRSDFLMIEG TIPGSFKRII RVR PAIRPP KKKPPVERPQ ITYVSRESKQ

+
Macromolecule #31: 50S ribosomal protein L4

MacromoleculeName: 50S ribosomal protein L4 / type: protein_or_peptide / ID: 31 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 28.768604 KDa
SequenceString: MKVKVFNLEG EPVEEIELPK VFSTPFRPDL IRRAVIASWT HRIQPQGRDP QAGKRRVTEN IGKGHGMARV ERIKTSPRFA AFVPFAVGG RRTHPPKVEK IIWEDINKKE RRLAIMSAIA ATANYDLVRA RGHVVDNVVQ IPLVVTDDLQ KVFKTAQTRE I FKKLGVWD ...String:
MKVKVFNLEG EPVEEIELPK VFSTPFRPDL IRRAVIASWT HRIQPQGRDP QAGKRRVTEN IGKGHGMARV ERIKTSPRFA AFVPFAVGG RRTHPPKVEK IIWEDINKKE RRLAIMSAIA ATANYDLVRA RGHVVDNVVQ IPLVVTDDLQ KVFKTAQTRE I FKKLGVWD DIERAKKNTK IRAGKGKMRG RRYKKAKGPL IVVAKNEGIV QGARNHPGVD VVTVDNLGVE YLAPGTHPGR LT IWTKGAI ERLREIYG

+
Macromolecule #32: 50S ribosomal protein L5

MacromoleculeName: 50S ribosomal protein L5 / type: protein_or_peptide / ID: 32 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 21.02757 KDa
SequenceString:
MQINREAILA DWEAHPMRKP RIAKVTINIG VGESGERLTK AETMLEQLVG QKPIRRRAKQ TNRDFGIRRG EPIAVKVTLR GEKAYQMLD RLLEAVDRKL KASNFDEHGN FCFGIQEHIN IPGVEYDPEI GIFGMDVCVT LERPGFRVAK RKRQRRKIPT K HKLTKEEG IVFAMEELKA KVEGL

+
Macromolecule #33: 50S ribosomal protein L6

MacromoleculeName: 50S ribosomal protein L6 / type: protein_or_peptide / ID: 33 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 20.888271 KDa
SequenceString:
MPVDAWIREE IEIPEGVEVT VEGNTVKVKG PKGELQRELK YPGVQIFTED GKVVIYKEFP RKKDVAIVRT FKAHINNMIK GVTEGFKYR LKVVYSHFPM TVKVQGDEVV IENFLGEKNP RRAKILPGVT VKVKGSEIEV EGIDKEAVGQ TAANIEQATR I TKWDRRVF QDGIYIVEKA GKPIKF

+
Macromolecule #34: 50S ribosomal protein L7Ae

MacromoleculeName: 50S ribosomal protein L7Ae / type: protein_or_peptide / ID: 34 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 13.454623 KDa
SequenceString:
MAKPSYVKFE VPQELAEKAL EAVEIARDTG RIRKGTNETT KAVERGQAKL VIIAEDVDPE EIVAHLPPLC EEKEIPYVYV PSKKELGAA AGLEVPAASV AIIEPGKARE LVEDIAMKVK ELMK

+
Macromolecule #35: 50S ribosomal protein L10e

MacromoleculeName: 50S ribosomal protein L10e / type: protein_or_peptide / ID: 35 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 21.116596 KDa
SequenceString:
MGLRPAKIDR DVDKPAYTRR EYIRGAPGPK ITIFDMGNLS AEFEYEVSLH AEQAMQIRQN ALEAIRIQVN RYLQKNVGRS NYHFKIRVY PFQVLRENPM ATGRKADRYG NGMRRPFGKP IGLAARVRKD QKILTVWVNG QHLKFALGAM HRAKMKLPYS A YYRIYDKE GNDVTTKVLS TMKL

+
Macromolecule #36: 50S ribosomal protein L13

MacromoleculeName: 50S ribosomal protein L13 / type: protein_or_peptide / ID: 36 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 16.316173 KDa
SequenceString:
MRIINAEGLI LGRLASKVAK MLLEGEEVVI VNAEKAIITG NREDIFAKYK QRTELRTRTN PRRGPFYPKR SDEIVRRTVR GMLPWKTDR GRKAFKRLKV YVGVPKEFEG KEFETISEAH MSRLATPKYV TVGEVAKFLG GKF

+
Macromolecule #37: 50S ribosomal protein L14

MacromoleculeName: 50S ribosomal protein L14 / type: protein_or_peptide / ID: 37 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 15.181888 KDa
SequenceString:
MAKKGAGATR GISPVRPTRA LPIGAYLKVA DNSGAKVIQI IGVVGYKGTR RRLAAAGVGD MVVATVKKGR PDMRHQVVRA VVVRQRKEY RRLDGMRVKF EDNAAAIVTP EGVPRGTEIR GAIAREAAER WVRLGSIASI VL

+
Macromolecule #38: 50S ribosomal protein L14e

MacromoleculeName: 50S ribosomal protein L14e / type: protein_or_peptide / ID: 38 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 8.968527 KDa
SequenceString:
MPAIEVGRIA VVIAGRRAGQ KVVVADIIDK NFVLVTGAGL NKVKRRRMNV KHLEPLPERV NIQRGASDEE IKAALEGAGI SLE

+
Macromolecule #39: 50S ribosomal protein L15

MacromoleculeName: 50S ribosomal protein L15 / type: protein_or_peptide / ID: 39 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 16.571436 KDa
SequenceString:
MIRRRKKVRK LRGSHTHGWG CKKKHRGGGS KGGRGMAGTG KRKDQKWTWT IKYAPDRLGK RGFHRPKAVQ YIPKVINLND IDENFELFK DAGIIYEEDG KLVFDATALG VDKILGTGKL TRALVVKAYY VTPKAEEKIK AAGGEVLLA

+
Macromolecule #40: 50S ribosomal protein L15e

MacromoleculeName: 50S ribosomal protein L15e / type: protein_or_peptide / ID: 40 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 22.607863 KDa
SequenceString: MGMYKYIREA WKSPKKSYVG ELLKKRMIQW RRDPVVKRIE RPTRLDRARS LGYQAKQGYV VVRVRVRRGG RKRPRWKGGR KPSKMGMVK YSPKKSLQWI AEEKAARKFP NLEVLNSYWV GEDGMYKWFE VIMVDPHHPV IKSDPKIAWI AGKAHKGRVF R GLTSAGKR ...String:
MGMYKYIREA WKSPKKSYVG ELLKKRMIQW RRDPVVKRIE RPTRLDRARS LGYQAKQGYV VVRVRVRRGG RKRPRWKGGR KPSKMGMVK YSPKKSLQWI AEEKAARKFP NLEVLNSYWV GEDGMYKWFE VIMVDPHHPV IKSDPKIAWI AGKAHKGRVF R GLTSAGKR SRGLLNKGKG AEKVRPSIRA HQGKGK

+
Macromolecule #41: 50S ribosomal protein L18

MacromoleculeName: 50S ribosomal protein L18 / type: protein_or_peptide / ID: 41 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 22.895449 KDa
SequenceString: MAHGPRYRVP FRRRREGKTN YHKRLKLLKS KKPRLVVRKT LNHHIAQIVV YDPKGDKTLV SAHTMELMRD FGWKGHGGNT PSAYLLGLL IGYKAKQAGI EEAILDIGLH PPTRGSSIFA VLKGAVDAGL NVPHSEEIYP EDYRINGEHI ANYAKALKEE D EALYRKQF ...String:
MAHGPRYRVP FRRRREGKTN YHKRLKLLKS KKPRLVVRKT LNHHIAQIVV YDPKGDKTLV SAHTMELMRD FGWKGHGGNT PSAYLLGLL IGYKAKQAGI EEAILDIGLH PPTRGSSIFA VLKGAVDAGL NVPHSEEIYP EDYRINGEHI ANYAKALKEE D EALYRKQF SGYLVKGLEP EKLPEHFEEV KAKIIEKFEG ARE

+
Macromolecule #42: 50S ribosomal protein L18e

MacromoleculeName: 50S ribosomal protein L18e / type: protein_or_peptide / ID: 42 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 13.799152 KDa
SequenceString:
MVKRTGPTDI NLRRLIRTLR KKSNEEGVKI WKDIAWRLER PRRQRAEVNI SKINRYTKEG DVVIVPGSVL GAGRLEHKVV VAAWKFSEA ARRKIIEAGG EAISIEELME RNPKGSGVII ME

+
Macromolecule #43: 50S ribosomal protein L19e

MacromoleculeName: 50S ribosomal protein L19e / type: protein_or_peptide / ID: 43 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 17.667176 KDa
SequenceString:
MIMLKTQRRI AAELLKCGEN RIWIDPERIE DVAAAITRED IKRLIHDGVI KKKPIKGQSR ARARAFQEAR KKGRHRGPGS KKGKKTARM GKKEVWMMTI RALRKELRKL KAEGKLDAHT YRRLYIRAKG GQFKNKRQLY MFMQEHGILK E

+
Macromolecule #44: 50S ribosomal protein L18Ae

MacromoleculeName: 50S ribosomal protein L18Ae / type: protein_or_peptide / ID: 44 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 9.227708 KDa
SequenceString:
MEVKVFRVKG TFERLGKKQP FTKEYRALKE EHVRELVYSD IGSKHRVPRT KIWIESIEEI KPEEAEDPVV RRLSLEL

+
Macromolecule #45: 50S ribosomal protein L21e

MacromoleculeName: 50S ribosomal protein L21e / type: protein_or_peptide / ID: 45 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 11.290313 KDa
SequenceString:
MVKKAHSFRR KTRGKLSKHP RRRGLPPLTR FLQEFEVGQK VHIVIEPSYH KGMPDPRFHG RTGTVVGKRG DAYIVQITDG GKVKTFFIH PVHLRPQKG

+
Macromolecule #46: 50S ribosomal protein L22

MacromoleculeName: 50S ribosomal protein L22 / type: protein_or_peptide / ID: 46 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 17.838777 KDa
SequenceString:
MSRGRFSYSF QNFDPERMAR ASGRDLRISP KHSVELLREI RGMMLNDALR YLDDVIAKKR PVPMKRFNDS QGHKPGKGFG PGRYPVKVA KAVKKILLNA KNNAEQKGLD VDRLKIIHAA AHRGPVLRGY IPRAFGRATP FNEQTTHIEI VVEEIRR

+
Macromolecule #47: 50S ribosomal protein L23

MacromoleculeName: 50S ribosomal protein L23 / type: protein_or_peptide / ID: 47 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 9.915769 KDa
SequenceString:
MDPYKVIIRP LVTEKAVSLI ERENKLTFIV DRRATKQDIK RAVEEMFNVK VAKVNTLVTM KGEKKAYVKL KPEYDASEIA ARLGLF

+
Macromolecule #48: 50S ribosomal protein L24

MacromoleculeName: 50S ribosomal protein L24 / type: protein_or_peptide / ID: 48 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 14.225809 KDa
SequenceString:
MKLDMKQPRK QRKFLYNAPL HLRGKIMSAP LSKELREKYG VRNLPIRVGD KVKVMRGDFK GVEGKVVEVD LRRYRIHVEG VTHKKTDGT EVFYPLHPSN VMIVELNLED EKREKIIERR AA

+
Macromolecule #49: 50S ribosomal protein L24e

MacromoleculeName: 50S ribosomal protein L24e / type: protein_or_peptide / ID: 49 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 8.111553 KDa
SequenceString:
MARWNVCSYC GREFEPGTGK MFVRNDGRVL FFCSSKCEKY YFMGRNPRKL KWTKAFQEAR LQRAKRK

+
Macromolecule #50: 50S ribosomal protein L29

MacromoleculeName: 50S ribosomal protein L29 / type: protein_or_peptide / ID: 50 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 7.937539 KDa
SequenceString:
MKPSEIREMS IEEIDKKIRE LRLELAKERG VLTMGASMEN PMVIRNLRRD IARLLTIKRE KLREKR

+
Macromolecule #51: 50S ribosomal protein L30

MacromoleculeName: 50S ribosomal protein L30 / type: protein_or_peptide / ID: 51 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 17.856193 KDa
SequenceString:
MAKLALIRLR SGIRARGEVR DTLAMLRLHR INHLVIVDDT PSYRGMIQKV KDYITWGEID KETLAKLLRK RGRLIGNKPI TDEYVKEKL GMTIEEFAEK VVNGEMKLRD LPNIKPVFRL HPPRGGLKGS KKRSFKEGGA LGYRGEKINE LIERML

+
Macromolecule #52: 50S ribosomal protein L30e

MacromoleculeName: 50S ribosomal protein L30e / type: protein_or_peptide / ID: 52 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 10.97282 KDa
SequenceString:
MVDFAFELRK VQDTGKIVMG AKKSIHLAKV GGAKLIIVAR NARPDIKEDI YYYAKLSGIP VYEFEGTSVE LGTLLGRPHT VSALAVIDP GESKILALAG GKE

+
Macromolecule #53: 50S ribosomal protein L31e

MacromoleculeName: 50S ribosomal protein L31e / type: protein_or_peptide / ID: 53 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 10.354293 KDa
SequenceString:
MPIKPGEEVI FVVPINKIKK RVPRWKRAPR AARFVREWIA RHAKADEVII GTDVNEKIWE RGAEKPPGKL RVKVVVEESE GKRIARVSL A

+
Macromolecule #54: 50S ribosomal protein L32e

MacromoleculeName: 50S ribosomal protein L32e / type: protein_or_peptide / ID: 54 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 14.65448 KDa
SequenceString:
MNEKARLLRI RAKLKRKKPR FLRQEWWRYP KFKNDPKWRR PKGIDSKMRL KKKGKPRSPS IGWSSPKAVR GLHPSGYEEV LVHNVKELE AIDPTRQAAR IAGTVGARKR EMILARAKEL GVKVLN

+
Macromolecule #55: 50S ribosomal protein L34e

MacromoleculeName: 50S ribosomal protein L34e / type: protein_or_peptide / ID: 55 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 10.558783 KDa
SequenceString:
MKPMYRSRSW RRKYVRTPGG RTVIHFERRK PKVAHCAMCG RPLNGVPRGR PSELRKLPKT KKRPERPYPN LCPSCMRKVM KAQVRASIT A

+
Macromolecule #56: 50S ribosomal protein L37Ae

MacromoleculeName: 50S ribosomal protein L37Ae / type: protein_or_peptide / ID: 56 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 9.24004 KDa
SequenceString:
MGRTTKVGSA GRFGPRYGLK IRRRVAAVEA RMKQKHVCPV CGRKAVRRIS TGIWQCQKCG ATFAGGAYLP TTPAGKVAKR VTASKA

+
Macromolecule #57: 50S ribosomal protein L37e

MacromoleculeName: 50S ribosomal protein L37e / type: protein_or_peptide / ID: 57 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 7.470875 KDa
SequenceString:
MGAGTAPKGK RNRTPTHIRC RRCGRRAFNV KKGYCAACGF GRSRRMRKYS WSHKWRKKRN LSY

+
Macromolecule #58: 50S ribosomal protein L39e

MacromoleculeName: 50S ribosomal protein L39e / type: protein_or_peptide / ID: 58 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 6.262679 KDa
SequenceString:
MARNKPFAKK LRLAKAAKQN RRVPVWVIVK TNRKVITHPK RRHWRRTKLK E

+
Macromolecule #59: 50S ribosomal protein L40e

MacromoleculeName: 50S ribosomal protein L40e / type: protein_or_peptide / ID: 59 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 5.781971 KDa
SequenceString:
MARFPEAEAR IFRKLVCMRC GATNPWGAKK CRKCGYKGLR PKAREPRGGG R

+
Macromolecule #60: LSU ribosomal protein L41E

MacromoleculeName: LSU ribosomal protein L41E / type: protein_or_peptide / ID: 60 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 5.051409 KDa
SequenceString:
MKRRPRKWKK KGRMRWKWIK KRIRRLKRQR RKERGLI

+
Macromolecule #61: 50S ribosomal protein L44e

MacromoleculeName: 50S ribosomal protein L44e / type: protein_or_peptide / ID: 61 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermococcus kodakarensis (archaea)
Molecular weightTheoretical: 11.204441 KDa
SequenceString:
MKYPKQIRTY CPFCKRHTIH KVEKVKKRPR SELSAGQRRF RRKLKGYTGF PRPNPAGREK PVKKLDLRFR CTVCGKAHTR GQGFRVKKF ELVEV

+
Macromolecule #62: ZINC ION

MacromoleculeName: ZINC ION / type: ligand / ID: 62 / Number of copies: 12 / Formula: ZN
Molecular weightTheoretical: 65.409 Da

+
Macromolecule #63: water

MacromoleculeName: water / type: ligand / ID: 63 / Number of copies: 2367 / Formula: HOH
Molecular weightTheoretical: 18.015 Da
Chemical component information

ChemComp-HOH:
WATER / Water

-
Experimental details

-
Structure determination

Methodcryo EM
Processingsingle particle reconstruction
Aggregation stateparticle

-
Sample preparation

Concentration0.25 mg/mL
BufferpH: 7.5
GridModel: Quantifoil R2/2 / Material: COPPER / Mesh: 200 / Support film - Material: CARBON / Support film - topology: CONTINUOUS / Support film - Film thickness: 2.0 nm / Pretreatment - Type: GLOW DISCHARGE
VitrificationCryogen name: ETHANE / Chamber humidity: 100 % / Chamber temperature: 277.15 K / Instrument: FEI VITROBOT MARK IV

-
Electron microscopy

MicroscopeFEI TITAN KRIOS
Electron beamAcceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN
Electron opticsC2 aperture diameter: 70.0 µm / Calibrated magnification: 29000 / Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELDBright-field microscopy
Image recordingFilm or detector model: FEI FALCON III (4k x 4k) / Detector mode: COUNTING / Average electron dose: 34.0 e/Å2
Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company

-
Image processing

CTF correctionSoftware - Name: CTFFIND (ver. 4)
Initial angle assignmentType: MAXIMUM LIKELIHOOD
Final angle assignmentType: MAXIMUM LIKELIHOOD
Final reconstructionApplied symmetry - Point group: C1 (asymmetric) / Resolution.type: BY AUTHOR / Resolution: 2.95 Å / Resolution method: FSC 0.143 CUT-OFF / Software - Name: RELION (ver. 3) / Number images used: 53737

-
Atomic model buiding 1

RefinementProtocol: RIGID BODY FIT
Output model

PDB-6skf:
Cryo-EM Structure of T. kodakarensis 70S ribosome

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi

Thousand views of thousand structures

  • Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
  • This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
  • The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

Read more