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Structure paper

TitleThe structure basis for de novo DNA methylation in chromatin
Journal, issue, pagesTo Be Published
Publish dateOct 17, 2024 (structure data deposition date)
AuthorsXie X / Liu M / Zhou XE / Worden EJ / Jones PA
External linksSearch PubMed
MethodsEM (single particle)
Resolution3.2 - 8.0 Å
Structure data

47349

9e05

EMDB-47349, PDB-9e05:
The consensus model of the cryo-EM structure of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome
Method: EM (single particle) / Resolution: 8.0 Å

47353

9e09

EMDB-47353, PDB-9e09:
Cryo-EM structure a single nucleosome (2) focus of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome
Method: EM (single particle) / Resolution: 3.72 Å

47354

9e0f

EMDB-47354, PDB-9e0f:
A focus of DNMT tetramer (1) of the cryo-EM structure of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome
Method: EM (single particle) / Resolution: 3.46 Å

47355

9e0g

EMDB-47355, PDB-9e0g:
A focus of tetramer (2) of the cryo-EM structure of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome
Method: EM (single particle) / Resolution: 3.72 Å

47367

9e0r

EMDB-47367, PDB-9e0r:
Cryo-EM structure of a single nucleosome (1) focus of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome
Method: EM (single particle) / Resolution: 3.2 Å

EMDB-71302: Focus map of DNMT3A2/3B3 tetramer for Cryo-EM structure of DNMT3A2/3B3 in complex with 167H3K36me2-nucleosome
Method: EM (single particle) / Resolution: 6.35 Å

EMDB-71304: Focus map of PWWP_1 domain for Cryo-EM structure of DNMT3A2/3B3 in complex with 167H3K36me2-nucleosome
Method: EM (single particle) / Resolution: 4.91 Å

EMDB-71305: Focus map of PWWP_2 for Cryo-EM structure of DNMT3A2/3B3 in complex with 167H3K36me2-nucleosome
Method: EM (single particle) / Resolution: 5.86 Å

EMDB-71306: Focus map of nucleosome for Cryo-EM structure of DNMT3A2/3B3 in complex with 167H3K36me2-nucleosome
Method: EM (single particle) / Resolution: 4.43 Å

EMDB-71605: Focus map of DNMT3A2/3B3 tetramer1 for Cryo-EM structure of DNMT3A2/3B3 in complex with H3K36me2 di-nucleosome with eight base pair linker
Method: EM (single particle) / Resolution: 4.89 Å

72318

9q7u

EMDB-72318, PDB-9q7u:
Composite map for Cryo-EM structure of DNMT3A2-DNMT3B3 tetramer bound to 167H3K36me2-nucleosome
Method: EM (single particle) / Resolution: 3.4 Å

72487

9y4p

EMDB-72487, PDB-9y4p:
Cryo-EM structure of DNMT3A2/3B3 in complex with H3K36me2 di-nucleosome with eight base pair linker
Method: EM (single particle) / Resolution: 3.84 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-SAH:
S-ADENOSYL-L-HOMOCYSTEINE

ChemComp-SAO:
5'-S-[(3S)-3-azaniumyl-3-carboxypropyl]-5'-thioadenosine

Source
  • homo sapiens (human)
  • xenopus laevis (African clawed frog)
KeywordsDNA BINDING PROTEIN / DNMT3A2 / DNMT3B3 / DNA methylation / di-nucleosome / DNMT3A2-DNMT3B3 / 167H3K36me2-nucleosome / DNMT3A2/DNMT3B3 / H3K36me2 di-nucleosome

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