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Structure paper

TitleSingle phage proteins sequester signals from TIR and cGAS-like enzymes.
Journal, issue, pagesNature, Year 2024
Publish dateAug 4, 2023 (structure data deposition date)
AuthorsLi, D. / Xiao, Y. / Fedorova, I. / Xiong, W. / Wang, Y. / Liu, X. / Huiting, E. / Ren, J. / Gao, Z. / Zhao, X. ...Li, D. / Xiao, Y. / Fedorova, I. / Xiong, W. / Wang, Y. / Liu, X. / Huiting, E. / Ren, J. / Gao, Z. / Zhao, X. / Cao, X. / Zhang, Y. / Bondy-Denomy, J. / Feng, Y.
External linksNature / PubMed:39478223
MethodsX-ray diffraction
Resolution1.38 - 3.15 Å
Structure data

PDB-8kbb:
Structure of apo-CmTad1
Method: X-RAY DIFFRACTION / Resolution: 2.56 Å

PDB-8kbd:
Structure of CmTad1 complexed with cAAG
Method: X-RAY DIFFRACTION / Resolution: 3.15 Å

PDB-8kbe:
Structure of CbTad1 complexed with 1',3'-cADPR
Method: X-RAY DIFFRACTION / Resolution: 2.16 Å

PDB-8kbf:
Structure of CbTad1 complexed with 1',3'-cADPR and cA3
Method: X-RAY DIFFRACTION / Resolution: 2.31 Å

PDB-8kbg:
Structure of CbTad1 complexed with 2',3'-cGAMP
Method: X-RAY DIFFRACTION / Resolution: 2.37 Å

PDB-8kbh:
Structure of CbTad1 complexed with 2',3'-cGAMP and cA3
Method: X-RAY DIFFRACTION / Resolution: 1.54 Å

PDB-8kbi:
Structure of apo-AcrIIA7
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-8kbj:
Structure of HgmTad2 complexed with 1',2'-cADPR
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-8kbk:
Structure of AcrIIA7 complexed with 1',2'-cADPR and cGG
Method: X-RAY DIFFRACTION / Resolution: 2.28 Å

PDB-8kbl:
Structure of AcrIIA7 complexed with 1',3'-cADPR and cGG
Method: X-RAY DIFFRACTION / Resolution: 1.98 Å

PDB-8kbm:
Structure of AcrIIA7 complexed with cGG
Method: X-RAY DIFFRACTION / Resolution: 1.38 Å

PDB-8wjc:
Structure of AcrIIA7 complexed with 3'3'-cGAMP
Method: X-RAY DIFFRACTION / Resolution: 2.11 Å

PDB-8wjd:
Structure of SptTad2 complexed with cGG
Method: X-RAY DIFFRACTION / Resolution: 1.71 Å

PDB-8wje:
Structure of apo-SPO1 Tad2
Method: X-RAY DIFFRACTION / Resolution: 2.27 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-OJC:
(2R,3R,3aS,5S,6R,7S,8R,11R,13S,15aR)-2-(6-amino-9H-purin-9-yl)-3,6,7,11,13-pentahydroxyoctahydro-2H,5H,11H,13H-5,8-epoxy-11lambda~5~,13lambda~5~-furo[2,3-g][1,3,5,9,2,4]tetraoxadiphosphacyclotetradecine-11,13-dione

ChemComp-1SY:
cGAMP

ChemComp-MF6:
(1S,3R,4R,6R,9S,11R,14R,15S,16R,18R)-4-(6-amino-9H-purin-9-yl)-9,11,15,16,18-pentahydroxy-2,5,8,10,12,17-hexaoxa-9lambda~5~,11lambda~5~-diphosphatricyclo[12.2.1.1~3,6~]octadecane-9,11-dione

ChemComp-C2E:
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)

ChemComp-4BW:
2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one

Source
  • clostridioides mangenotii lm2 (bacteria)
  • synthetic construct (others)
  • clostridium botulinum (bacteria)
  • metagenome (others)
  • sphingobacterium thalpophilum (bacteria)
  • bacillus phage spo1 (virus)
KeywordsVIRAL PROTEIN / VIRAL PROTEIN/RNA / VIRAL PROTEIN-RNA complex / AcrIIA7

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