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Open data
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Basic information
Entry | Database: PDB / ID: 8kbg | ||||||
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Title | Structure of CbTad1 complexed with 2',3'-cGAMP | ||||||
![]() | Thoeris anti-defense 1 | ||||||
![]() | VIRAL PROTEIN | ||||||
Function / homology | nucleotide binding / cGAMP / Thoeris anti-defense 1![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Xiao, Y. / Feng, Y. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Structure of CbTad1 complexed with 2',3'-cGAMP Authors: Xiao, Y. / Feng, Y. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 164.2 KB | Display | ![]() |
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PDB format | ![]() | 131.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 14244.002 Da / Num. of mol.: 6 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Chemical | ChemComp-1SY / #3: Water | ChemComp-HOH / | Has ligand of interest | Y | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.35 Å3/Da / Density % sol: 47.62 % |
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Crystal grow | Temperature: 291 K / Method: vapor diffusion, hanging drop / Details: 0.1 M MIB pH 6.0, 55% v/v MPD |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Jul 15, 2023 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.979 Å / Relative weight: 1 |
Reflection | Resolution: 2.37→35.57 Å / Num. obs: 33894 / % possible obs: 99.9 % / Redundancy: 6.8 % / CC1/2: 0.996 / Rmerge(I) obs: 0.161 / Rpim(I) all: 0.066 / Rrim(I) all: 0.174 / Χ2: 0.95 / Net I/σ(I): 10.2 / Num. measured all: 230965 |
Reflection shell | Resolution: 2.37→2.43 Å / % possible obs: 100 % / Redundancy: 7.1 % / Rmerge(I) obs: 1.4 / Num. measured all: 17590 / Num. unique obs: 2488 / CC1/2: 0.552 / Rpim(I) all: 0.567 / Rrim(I) all: 1.512 / Χ2: 0.97 / Net I/σ(I) obs: 1.8 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.37→31.47 Å
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Refine LS restraints |
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LS refinement shell |
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