Database of articles cited by EMDB/PDB/SASBDB data

Keywords
Structure methods	All X-ray diffraction NMR electron microscopy small angle scattering neutron diffraction fiber diffraction powder diffraction infrared spectroscopy EPR fluorescence transfer theoretical model Hybrid
Author
Journal
IF	>30 >20 >10 >5 all

Title	Crystallographic fragment screen of the c-di-AMP-synthesizing enzyme CdaA from Bacillus subtilis.
Journal, issue, pages	Acta Crystallogr. ,Sect. F, Vol. 80, Page 200-209, Year 2024
Publish date	Mar 15, 2023 (structure data deposition date)
Authors	Garbers, T. / Neumann, P. / Wollenhaupt, J. / Dickmanns, A. / Weiss, M.S. / Ficner, R.
External links	Acta Crystallogr. ,Sect. F / PubMed:39177700
Methods	X-ray diffraction
Resolution	1.1 - 2.45 Å
Structure data	PDB-8ofh: Streptococcus pneumoniae CdaA Method: X-RAY DIFFRACTION / Resolution: 1.64 Å PDB-8ofo: Structure of Enterococcus faecium CdaA Method: X-RAY DIFFRACTION / Resolution: 2.45 Å PDB-8ogm: Crystal structure of CdaA from Bacillus subtilis Method: X-RAY DIFFRACTION / Resolution: 1.1 Å PDB-8ogn: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry A09 Method: X-RAY DIFFRACTION / Resolution: 1.29 Å PDB-8ogo: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry A12 Method: X-RAY DIFFRACTION / Resolution: 1.21 Å PDB-8ogp: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry B03 Method: X-RAY DIFFRACTION / Resolution: 1.22 Å PDB-8ogq: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry B06 Method: X-RAY DIFFRACTION / Resolution: 1.42 Å PDB-8ogr: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry B07 Method: X-RAY DIFFRACTION / Resolution: 1.35 Å PDB-8ogs: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry B08 Method: X-RAY DIFFRACTION / Resolution: 1.25 Å PDB-8ogt: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry C04 Method: X-RAY DIFFRACTION / Resolution: 1.5 Å PDB-8ogu: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry C07 Method: X-RAY DIFFRACTION / Resolution: 1.41 Å PDB-8ogv: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry C08 Method: X-RAY DIFFRACTION / Resolution: 1.25 Å PDB-8ogw: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry D02 Method: X-RAY DIFFRACTION / Resolution: 1.17 Å PDB-8ogy: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry D04 Method: X-RAY DIFFRACTION / Resolution: 1.23 Å PDB-8ogz: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry D06 Method: X-RAY DIFFRACTION / Resolution: 1.14 Å PDB-8oh0: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry D08 Method: X-RAY DIFFRACTION / Resolution: 1.27 Å PDB-8oh1: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry E04 Method: X-RAY DIFFRACTION / Resolution: 1.22 Å PDB-8ohb: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry E08 Method: X-RAY DIFFRACTION / Resolution: 1.11 Å PDB-8ohc: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry E12 Method: X-RAY DIFFRACTION / Resolution: 1.17 Å PDB-8ohe: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry F03 Method: X-RAY DIFFRACTION / Resolution: 1.15 Å PDB-8ohf: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry F04 Method: X-RAY DIFFRACTION / Resolution: 1.22 Å PDB-8ohg: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry F09 Method: X-RAY DIFFRACTION / Resolution: 1.25 Å PDB-8ohh: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry G05 Method: X-RAY DIFFRACTION / Resolution: 1.3 Å PDB-8ohj: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry G08 Method: X-RAY DIFFRACTION / Resolution: 1.22 Å PDB-8ohk: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry H01 Method: X-RAY DIFFRACTION / Resolution: 1.26 Å PDB-8ohl: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry H09 Method: X-RAY DIFFRACTION / Resolution: 1.29 Å PDB-8oho: PanDDA analysis group deposition -- CdaA in complex with fragment F2X-Entry H11 Method: X-RAY DIFFRACTION / Resolution: 1.32 Å PDB-9g0g: BsCdaA in complex with Compound 7 Method: X-RAY DIFFRACTION / Resolution: 1.7 Å
Chemicals	ChemComp-HOH: WATER ChemComp-P4G: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE ChemComp, No image ChemComp-U8O: Unknown entry ChemComp-MG: Unknown entry ChemComp-TJ1: 3-(propan-2-yl)-1,2,4-oxadiazol-5(4H)-one ChemComp-SYG: 2-[(1~{S})-1-azanylpropyl]phenol ChemComp-R8P: (1S)-1-(4-nitrophenyl)ethan-1-ol ChemComp, No image ChemComp-UIS: Unknown entry ChemComp-T9S: ethyl 1,3-dihydro-2H-pyrrolo[3,4-c]pyridine-2-carboxylate ChemComp-R8S: 2-hydrazinyl-4-methoxypyrimidine ChemComp, No image ChemComp-VN9: Unknown entry ChemComp-R8V: (3S)-3-hydroxy-2-methyl-2,3-dihydro-1H-isoindol-1-one ChemComp-SY4: ~{N}-[5-azanyl-2,4-bis(fluoranyl)phenyl]propane-1-sulfonamide ChemComp-RQD: methyl 4-fluoro-L-phenylalaninate ChemComp, No image ChemComp-VNE: Unknown entry ChemComp, No image ChemComp-VNO: Unknown entry ChemComp, No image ChemComp-VNV: Unknown entry ChemComp, No image ChemComp-UHL: Unknown entry ChemComp-SYV: 6-azanyl-3-methyl-1,3-benzoxazol-2-one ChemComp-RAY: N-(3-fluorophenyl)-2-(2-methoxyethoxy)acetamide ChemComp-RB7: N-[(4-bromo-3-methylphenyl)methyl]-2-(methylsulfonyl)ethan-1-amine ChemComp, No image ChemComp-UI4: Unknown entry ChemComp-XY4: N-phenyl-N'-propan-2-ylurea ChemComp-RDJ: N-ethyl-2-{[5-(propan-2-yl)-1,3,4-oxadiazol-2-yl]sulfanyl}acetamide ChemComp, No image ChemComp-VOB: Unknown entry ChemComp, No image ChemComp-VOF: Unknown entry ChemComp-TBJ: N-cyclopentyl-N'-{[(2R)-oxolan-2-yl]methyl}urea ChemComp-REG: 1-cyclopentyl-3-[[(2~{S})-oxolan-2-yl]methyl]urea ChemComp-TJ9: ~{N}-[5-(2-azanyl-1,3-thiazol-4-yl)-4-methyl-1,3-thiazol-2-yl]ethanamide ChemComp-DMS: DIMETHYL SULFOXIDE / DMSO, precipitantYM ChemComp-PEG: DI(HYDROXYETHYL)ETHER ChemComp-CL*: Unknown entry
Source	streptococcus pneumoniae r6 (bacteria) enterococcus faecium (bacteria) bacillus subtilis subsp. subtilis str. 168 (bacteria) bacillus subtilis (bacteria)
Keywords	TRANSFERASE / diadenylate cyclase / CdaA / Cyclic-di-AMP