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Structure paper

TitleA Multiplexing Activity-Based Protein-Profiling Platform for Dissection of a Native Bacterial Xyloglucan-Degrading System.
Journal, issue, pagesAcs Cent. Sci., Vol. 9, Page 2306-2314, Year 2023
Publish dateNov 13, 2022 (structure data deposition date)
AuthorsMcGregor, N.G.S. / de Boer, C. / Foucart, Q.P.O. / Beenakker, T. / Offen, W.A. / Codee, J.D.C. / Willems, L.I. / Overkleeft, H.S. / Davies, G.J.
External linksAcs Cent. Sci. / PubMed:38161374
MethodsX-ray diffraction
Resolution1.3 - 2.701 Å
Structure data

PDB-8bn7:
CjCel5C endo-glucanase
Method: X-RAY DIFFRACTION / Resolution: 2.182 Å

PDB-8bqa:
CjCel5B endo-glucanase bound to CB665 covalent inhibitor
Method: X-RAY DIFFRACTION / Resolution: 1.67 Å

PDB-8bqb:
CjCel5C endo-glucanase bound to CB396 covalent inhibitor
Method: X-RAY DIFFRACTION / Resolution: 2.701 Å

PDB-8bqc:
CjCel5B endo-glucanase
Method: X-RAY DIFFRACTION / Resolution: 1.57 Å

PDB-8oz1:
CjCel5D endo-xyloglucanase bounc to CB665 covalent inhibitor
Method: X-RAY DIFFRACTION / Resolution: 1.3 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-RBH:
~{N}-[(2~{S},3~{S},4~{S},5~{R})-2-(hydroxymethyl)-4,5,6-tris(oxidanyl)oxan-3-yl]-2-oxidanyl-ethanamide

ChemComp-XYS:
alpha-D-xylopyranose

ChemComp-YLL:
(1R,2S,3S,4S,5R,6R)-6-(HYDROXYMETHYL)CYCLOHEXANE-1,2,3,4,5-PENTOL

ChemComp-BGC:
beta-D-glucopyranose

ChemComp-BO3:
BORIC ACID

Source
  • cellvibrio japonicus (bacteria)
  • cellvibrio japonicus ueda107 (bacteria)
KeywordsHYDROLASE / Carbohydrate / inhibitor / covalent / cellulase / xyloglucanase

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