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Structure paper

TitleStructural Insights into the Very Low Activity of the Homocoenzyme B 12 Adenosylmethylcobalamin in Coenzyme B 12 -Dependent Diol Dehydratase and Ethanolamine Ammonia-Lyase.
Journal, issue, pagesChemistry, Vol. 28, Page e202202196-e202202196, Year 2022
Publish dateMay 10, 2022 (structure data deposition date)
AuthorsShibata, N. / Higuchi, Y. / Krautler, B. / Toraya, T.
External linksChemistry / PubMed:35974426
MethodsX-ray diffraction
Resolution1.75 - 2.3 Å
Structure data

PDB-7xrk:
Diol dehydratase complexed with AdoMeCbl
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-7xrl:
Diol dehydratase complexed with AdoMeCbl and 1,2-propanediol
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

PDB-7xrm:
Ethanolamine ammonia-lyase complexed with AdoMeCbl
Method: X-RAY DIFFRACTION / Resolution: 2.13 Å

PDB-7xrn:
Ethanolamine ammonia-lyase complexed with AdoMeCbl in the presence of substrate
Method: X-RAY DIFFRACTION / Resolution: 2.07 Å

Chemicals

ChemComp-CA:
Unknown entry

ChemComp-K:
Unknown entry

ChemComp-FWK:
(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-ethyl-oxolane-3,4-diol

ChemComp-B12:
COBALAMIN

ChemComp-HOH:
WATER

ChemComp-PGO:
S-1,2-PROPANEDIOL

ChemComp-NH4:
AMMONIUM ION

ChemComp-GOL:
GLYCEROL

Source
  • klebsiella oxytoca (bacteria)
  • escherichia coli (E. coli)
KeywordsLYASE / Adenosylcobalamin / Radical enzyme

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