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Structure paper

TitleThe porphyran degradation system of the human gut microbiota is complete, phylogenetically diverse and geographically structured across Asian populations
Journal, issue, pagesBiorxiv, Year 2023
Publish dateOct 28, 2021 (structure data deposition date)
AuthorsMathieu, S. / Touvrey, M. / Poulet, L. / Drouillard, S. / Ulaganathan, T.S. / Segurel, L. / Cygler, M. / Helbert, W.
External linksBiorxiv / Search PubMed
MethodsX-ray diffraction
Resolution1.74 - 2.1 Å
Structure data

PDB-7snj:
Structure of Bacple_01701, a 6-O-galactose porphyran sulfatase
Method: X-RAY DIFFRACTION / Resolution: 1.74 Å

PDB-7snk:
Structure of Bacple_01702, a GH29 family glycoside hydrolase
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-7sno:
Structure of Bacple_01701(H214N), a 6-O-galactose porphyran sulfatase
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-8ep4:
Structure of Bacple_01703
Method: X-RAY DIFFRACTION / Resolution: 1.94 Å

PDB-8ew1:
Structure of Bacple_01703-E145L
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

Chemicals

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-P4G:
1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE

ChemComp-PG4:
TETRAETHYLENE GLYCOL / precipitant*YM

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-CIT:
CITRIC ACID

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-PO4:
PHOSPHATE ION

ChemComp-K:
Unknown entry

ChemComp-PGE:
TRIETHYLENE GLYCOL

ChemComp-EPE:
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID / pH buffer*YM

ChemComp-ACT:
ACETATE ION

ChemComp-CA:
Unknown entry

ChemComp-GOL:
GLYCEROL

ChemComp-CL:
Unknown entry

Source
  • phocaeicola plebeius dsm 17135 (bacteria)
KeywordsHYDROLASE / 6-O-galactose porphyran sulfatase / GH29 family / bacterial glycoside hydrolase / BACPLE_01703 / glycoside hydrolase of GH16 family

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