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Structure paper

TitleA shared mechanistic pathway for pyridoxal phosphate-dependent arginine oxidases.
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Vol. 118, Year 2021
Publish dateJun 9, 2021 (structure data deposition date)
AuthorsHoffarth, E.R. / Caddell Haatveit, K. / Kuatsjah, E. / MacNeil, G.A. / Saroya, S. / Walsby, C.J. / Eltis, L.D. / Houk, K.N. / Garcia-Borras, M. / Ryan, K.S.
External linksProc. Natl. Acad. Sci. USA / PubMed:34580201
MethodsX-ray diffraction
Resolution1.926 - 2.5 Å
Structure data

PDB-7n79:
O2-, PLP-dependent desaturase Plu4 holo-enzyme
Method: X-RAY DIFFRACTION / Resolution: 1.98 Å

PDB-7rf9:
O2-, PLP-dependent desaturase Plu4 intermediate-bound enzyme
Method: X-RAY DIFFRACTION / Resolution: 1.926 Å

PDB-7rgb:
O2-, PLP-dependent desaturase Plu4 product-bound enzyme
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

Chemicals

ChemComp-BTB:
2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

ChemComp-ACT:
ACETATE ION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-HOH:
WATER

ChemComp-EJ1:
(2E)-5-carbamimidamido-2-{[(Z)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4(1H)-ylidene}methyl]imino}pentanoic acid

ChemComp-GOL:
GLYCEROL

ChemComp-AE3:
2-(2-ETHOXYETHOXY)ETHANOL

ChemComp-4VI:
(2Z,4E)-5-carbamimidamido-2-iminopent-4-enoic acid

Source
  • pseudoalteromonas luteoviolacea (bacteria)
KeywordsBIOSYNTHETIC PROTEIN / arginine desaturase / oxygen- and PLP-dependent oxidase / Fold Type I / biosynthesis

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