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TitleSmall-Molecule Ebselen Binds to YTHDF Proteins Interfering with the Recognition of N 6 -Methyladenosine-Modified RNAs.
Journal, issue, pagesAcs Pharmacol Transl Sci, Vol. 5, Page 872-891, Year 2022
Publish dateAug 4, 2021 (structure data deposition date)
AuthorsMicaelli, M. / Dalle Vedove, A. / Cerofolini, L. / Vigna, J. / Sighel, D. / Zaccara, S. / Bonomo, I. / Poulentzas, G. / Rosatti, E.F. / Cazzanelli, G. ...Micaelli, M. / Dalle Vedove, A. / Cerofolini, L. / Vigna, J. / Sighel, D. / Zaccara, S. / Bonomo, I. / Poulentzas, G. / Rosatti, E.F. / Cazzanelli, G. / Alunno, L. / Belli, R. / Peroni, D. / Dassi, E. / Murakami, S. / Jaffrey, S.R. / Fragai, M. / Mancini, I. / Lolli, G. / Quattrone, A. / Provenzani, A.
External linksAcs Pharmacol Transl Sci / PubMed:36268123
MethodsX-ray diffraction
Resolution2.15 - 2.65 Å
Structure data

PDB-7pcu:
Crystal structure of YTHDF1 YTH domain in complex with ebselen
Method: X-RAY DIFFRACTION / Resolution: 2.65 Å

PDB-7qkn:
Crystal structure of YTHDF1 YTH domain in complex with the ebsulfur derivative compound 7
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-7ql7:
Crystal structure of YTHDF1 YTH domain in complex with the ebsulfur derivative compound 9
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

Chemicals

ChemComp-9JT:
N-phenyl-2-selanylbenzamide

ChemComp-HOH:
WATER

ChemComp-JVF:
~{N}-[2-(diethylamino)ethyl]-2-sulfanyl-benzamide

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-SCN:
THIOCYANATE ION

ChemComp-E3J:
~{N}-(2-morpholin-4-ylethyl)-2-sulfanyl-benzamide

Source
  • homo sapiens (human)
KeywordsRNA BINDING PROTEIN / mRNA binding and stability

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