Database of articles cited by EMDB/PDB/SASBDB data

Keywords
Structure methods	All X-ray diffraction NMR electron microscopy small angle scattering neutron diffraction fiber diffraction powder diffraction infrared spectroscopy EPR fluorescence transfer theoretical model Hybrid
Author
Journal
IF	>30 >20 >10 >5 all

Title	Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
Journal, issue, pages	J. Am. Chem. Soc., Vol. 143, Page 15998-16006, Year 2021
Publish date	Oct 21, 2020 (structure data deposition date)
Authors	Yagi, S. / Padhi, A.K. / Vucinic, J. / Barbe, S. / Schiex, T. / Nakagawa, R. / Simoncini, D. / Zhang, K.Y.J. / Tagami, S.
External links	J. Am. Chem. Soc. / PubMed:34559526
Methods	X-ray diffraction
Resolution	1.201 - 2.314 Å
Structure data	PDB-7dbo: DPBB domain of VCP-like ATPase from Thermoplasma acidophilum Method: X-RAY DIFFRACTION / Resolution: 1.9 Å PDB-7dg7: DPBB domain of VCP-like ATPase from Methanopyrus kandleri Method: X-RAY DIFFRACTION / Resolution: 1.604 Å PDB-7dg9: DPBB domain of VCP-like ATPase from Aeropyrum pernix Method: X-RAY DIFFRACTION / Resolution: 1.602 Å PDB-7di0: Crystal structure of the rationally designed apDPBB_sym_79 protein Method: X-RAY DIFFRACTION / Resolution: 1.6 Å PDB-7di1: Crystal structure of the rationally designed mkDPBB_sym_86 protein Method: X-RAY DIFFRACTION / Resolution: 2.097 Å PDB-7du6: Crystal structure of the rationally designed mkDPBB_sym2 protein Method: X-RAY DIFFRACTION / Resolution: 1.6 Å PDB-7du7: Crystal structure of the rationally designed mkDPBB_sym1 protein Method: X-RAY DIFFRACTION / Resolution: 1.201 Å PDB-7dvc: Crystal structure of the computationally designed reDPBB_sym1 protein Method: X-RAY DIFFRACTION / Resolution: 1.705 Å PDB-7dvf: Crystal structure of the computationally designed reDPBB_sym2 protein Method: X-RAY DIFFRACTION / Resolution: 1.209 Å PDB-7dvh: Crystal structure of the computationally designed reDPBB_sym4 protein Method: X-RAY DIFFRACTION / Resolution: 1.698 Å PDB-7dww: Crystal structure of the computationally designed msDPBB_sym2 protein Method: X-RAY DIFFRACTION / Resolution: 1.802 Å PDB-7dxr: Crystal structure of the mk2h peptide homodimer. Method: X-RAY DIFFRACTION / Resolution: 1.6 Å PDB-7dxs: Crystal structure of the ap1h peptide homodimer. Method: X-RAY DIFFRACTION / Resolution: 2.102 Å PDB-7dxt: Crystal structure of the chemically synthesized mk2h peptide homodimer Method: X-RAY DIFFRACTION / Resolution: 1.8 Å PDB-7dxu: Crystal structure of the mk2h_deltaP peptide homodimer Method: X-RAY DIFFRACTION / Resolution: 2.314 Å PDB-7dxv: Crystal structure of the mk2h_deltaY peptide homodimer Method: X-RAY DIFFRACTION / Resolution: 2.301 Å PDB-7dxw: Crystal structure of the mk2h_deltaMIL peptide homodimer Method: X-RAY DIFFRACTION / Resolution: 1.509 Å PDB-7dxx: Crystal structure of the mk2h_deltaMILPS peptide homodimer Method: X-RAY DIFFRACTION / Resolution: 1.403 Å PDB-7dxy: Crystal structure of the chemically synthesized mk2h_deltaMILPS peptide homodimer Method: X-RAY DIFFRACTION / Resolution: 1.4 Å PDB-7dxz: Crystal structure of the chemically synthesized mk2h_deltaMILPYS peptide homodimer in complex with malonate Method: X-RAY DIFFRACTION / Resolution: 1.9 Å PDB-7dyc: Crystal structure of the chemically synthesized mk2h_deltaMILPYS peptide homodimer in complex with malate Method: X-RAY DIFFRACTION / Resolution: 2.3 Å
Chemicals	ChemComp-SO4: SULFATE ION ChemComp-HOH: WATER ChemComp-IMD: IMIDAZOLE ChemComp-ZN: Unknown entry ChemComp-EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID / pH bufferYM ChemComp-CL: Unknown entry ChemComp-ACT: ACETATE ION ChemComp-MPD: (4S)-2-METHYL-2,4-PENTANEDIOL / precipitantYM ChemComp-CXS: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID / pH bufferYM ChemComp-MLA: MALONIC ACID ChemComp-MLT: D-MALATE ChemComp-LMR*: (2S)-2-hydroxybutanedioic acid
Source	thermoplasma acidophilum (strain atcc 25905 / dsm 1728 / jcm 9062 / nbrc 15155 / amrc-c165) (acidophilic) methanopyrus kandleri (strain av19 / dsm 6324 / jcm 9639 / nbrc 100938) (archaea) aeropyrum pernix (strain atcc 700893 / dsm 11879 / jcm 9820 / nbrc 100138 / k1) (archaea) synthetic construct (others)
Keywords	CHAPERONE / Double psi beta barrel