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Structure paper

TitleX-ray structural analyses of azide-bound cytochromecoxidases reveal that the H-pathway is critically important for the proton-pumping activity.
Journal, issue, pagesJ. Biol. Chem., Vol. 293, Page 14868-14879, Year 2018
Publish dateJan 31, 2018 (structure data deposition date)
AuthorsShimada, A. / Hatano, K. / Tadehara, H. / Yano, N. / Shinzawa-Itoh, K. / Yamashita, E. / Muramoto, K. / Tsukihara, T. / Yoshikawa, S.
External linksJ. Biol. Chem. / PubMed:30077971
MethodsX-ray diffraction
Resolution1.65 - 1.9 Å
Structure data

PDB-5z84:
The structure of azide-bound cytochrome c oxidase determined using the crystals exposed to 20 mM azide solution for 4 days
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-5z85:
The structure of azide-bound cytochrome c oxidase determined using the another batch crystals exposed to 20 mM azide solution for 2 days
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-5z86:
azide-bound cytochrome c oxidase structure determined using the crystals exposed to 20 mM azide solution for 3 days
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-5zco:
azide-bound cytochrome c oxidase structure determined using the crystals exposed to 2 mM azide solution for 2 days
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-5zcp:
azide-bound cytochrome c oxidase structure determined using the crystals exposed to 20 mM azide solution for 2 days
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

PDB-5zcq:
Azide-bound cytochrome c oxidase structure determined using the crystals exposed to 10 mM azide solution for 2 days
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

PDB-8gvm:
The structure of azide-bound cytochrome C oxidase determined using the crystals exposed to 20 mm azide solution for 4 days
Method: X-RAY DIFFRACTION / Resolution: 1.851 Å

Chemicals

ChemComp-HEA:
HEME-A

ChemComp-CU:
COPPER (II) ION

ChemComp-MG:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-AZI:
AZIDE ION

ChemComp-TGL:
TRISTEAROYLGLYCEROL

ChemComp-PGV:
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE / phospholipid*YM

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-CHD:
CHOLIC ACID

ChemComp-CUA:
DINUCLEAR COPPER ION

ChemComp-PSC:
(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE / phospholipid*YM

ChemComp-DMU:
DECYL-BETA-D-MALTOPYRANOSIDE / detergent*YM

ChemComp-UNX:
Unknown entry

ChemComp-PEK:
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE / phospholipid*YM

ChemComp-CDL:
CARDIOLIPIN / phospholipid*YM

ChemComp-ZN:
Unknown entry

ChemComp-HOH:
WATER

Source
  • bos taurus (cattle)
KeywordsOXIDOREDUCTASE / metalloenzyme cytochrome c oxidase proton pump bioenergetics heme copper / MEMBRANE PROTEIN / METALLOENZYME / CYTOCHROME C OXIDASE / PROTON PUMP / BIOENERGETICS / HEME / COPPER

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