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Structure paper

TitleDirect Participation of a Peripheral Side Chain of a Corrin Ring in Coenzyme B12Catalysis.
Journal, issue, pagesAngew. Chem. Int. Ed. Engl., Vol. 57, Page 7830-7835, Year 2018
Publish dateNov 10, 2017 (structure data deposition date)
AuthorsShibata, N. / Sueyoshi, Y. / Higuchi, Y. / Toraya, T.
External linksAngew. Chem. Int. Ed. Engl. / PubMed:29797764
MethodsX-ray diffraction
Resolution1.55 - 2.05 Å
Structure data

PDB-5yrt:
Diol dehydratase, AdoCbl/substrate-free, anaerobically-prepared crystal
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-5yrv:
Diol dehydratase, AdoCbl/1,2-propanediol, anaerobically-prepared crystal
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

PDB-5ysh:
Diol dehydratase - alpha/T172A mutant complexed with AdoCbl, aerobically-prepared crystal
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-5ysn:
Ethanolamine ammonia-lyase, AdoCbl/substrate-free
Method: X-RAY DIFFRACTION / Resolution: 2.001 Å

PDB-5ysr:
Ethanolamine ammonia-lyase, AdoCbl/2-amino-1-propanol
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

Chemicals

ChemComp-CA:
Unknown entry

ChemComp-K:
Unknown entry

ChemComp-5AD:
5'-DEOXYADENOSINE

ChemComp-CL:
Unknown entry

ChemComp-B12:
COBALAMIN

ChemComp-HOH:
WATER

ChemComp-PGO:
S-1,2-PROPANEDIOL

ChemComp-GOL:
GLYCEROL

Source
  • klebsiella oxytoca (bacteria)
  • escherichia coli (strain k12) (bacteria)
  • escherichia coli k-12 (bacteria)
KeywordsLYASE / Adenosylcobalamin / Radical enzyme

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