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TitleAllosteric pyruvate kinase-based "logic gate" synergistically senses energy and sugar levels in Mycobacterium tuberculosis.
Journal, issue, pagesNat Commun, Vol. 8, Page 1986-1986, Year 2017
Publish dateDec 2, 2016 (structure data deposition date)
AuthorsZhong, W. / Cui, L. / Goh, B.C. / Cai, Q. / Ho, P. / Chionh, Y.H. / Yuan, M. / Sahili, A.E. / Fothergill-Gilmore, L.A. / Walkinshaw, M.D. ...Zhong, W. / Cui, L. / Goh, B.C. / Cai, Q. / Ho, P. / Chionh, Y.H. / Yuan, M. / Sahili, A.E. / Fothergill-Gilmore, L.A. / Walkinshaw, M.D. / Lescar, J. / Dedon, P.C.
External linksNat Commun / PubMed:29215013
MethodsX-ray diffraction
Resolution1.9 - 2.85 Å
Structure data

PDB-5wrp:
T-state crystal structure of pyruvate kinase from Mycobacterium tuberculosis
Method: X-RAY DIFFRACTION / Resolution: 2.85 Å

PDB-5ws8:
Pyruvate kinase (PYK) from Mycobacterium tuberculosis in complex with Oxalate
Method: X-RAY DIFFRACTION / Resolution: 2.62 Å

PDB-5ws9:
Pyruvate kinase (PYK) from Mycobacterium tuberculosis in complex with Oxalate, ATP and allosteric activator AMP
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-5wsa:
Pyruvate kinase (PYK) from Mycobacterium tuberculosis in complex with Oxalate and allosteric activator Glucose 6-Phosphate
Method: X-RAY DIFFRACTION / Resolution: 2.85 Å

PDB-5wsb:
Pyruvate kinase (PYK) from Mycobacterium tuberculosis in complex with Oxalate, allosteric activators AMP and Glucose 6-Phosphate
Method: X-RAY DIFFRACTION / Resolution: 2.25 Å

PDB-5wsc:
Crystal of pyruvate kinase (PYK) from Mycobacterium tuberculosis in complex with Oxalate, soaked with allosteric activators AMP and Glucose 6-Phosphate
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

Chemicals

ChemComp-PO4:
PHOSPHATE ION

ChemComp-HOH:
WATER

ChemComp-MG:
Unknown entry

ChemComp-OXL:
OXALATE ION

ChemComp-AMP:
ADENOSINE MONOPHOSPHATE / AMP*YM

ChemComp-K:
Unknown entry

ChemComp-ATP:
ADENOSINE-5'-TRIPHOSPHATE / ATP, energy-carrying molecule*YM

ChemComp-G6P:
6-O-phosphono-alpha-D-glucopyranose

Source
  • mycobacterium tuberculosis (strain atcc 25618 / h37rv) (bacteria)
KeywordsTRANSFERASE / pyruvate kinase / glycolysis / tetramer / allostery / synergism / phospho transferase

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