Database of articles cited by EMDB/PDB/SASBDB data

Keywords
Structure methods	All X-ray diffraction NMR electron microscopy small angle scattering neutron diffraction fiber diffraction powder diffraction infrared spectroscopy EPR fluorescence transfer theoretical model Hybrid
Author
Journal
IF	>30 >20 >10 >5 all

Title	Structure-Based Insights into the Role of the Cys-Tyr Crosslink and Inhibitor Recognition by Mammalian Cysteine Dioxygenase.
Journal, issue, pages	J. Mol. Biol., Vol. 428, Page 3999-4012, Year 2016
Publish date	May 9, 2014 (structure data deposition date)
Authors	Driggers, C.M. / Kean, K.M. / Hirschberger, L.L. / Cooley, R.B. / Stipanuk, M.H. / Karplus, P.A.
External links	J. Mol. Biol. / PubMed:27477048
Methods	X-ray diffraction
Resolution	1.2469 - 1.6 Å
Structure data	PDB-4pix: Unliganded Cysteine Dioxygenase C93A variant at pH 6.2 Method: X-RAY DIFFRACTION / Resolution: 1.35 Å PDB-4piy: Homocysteine bound Cysteine Dioxygenase C93A variant at pH 6.2 Method: X-RAY DIFFRACTION / Resolution: 1.6 Å PDB-4piz: Homocysteine-bound Cysteine Dioxygenase at pH 6.2 Method: X-RAY DIFFRACTION / Resolution: 1.4 Å PDB-4pjy: Azide bound Cysteine Dioxygenase at pH 6.2 Method: X-RAY DIFFRACTION / Resolution: 1.501 Å PDB-4xet: Fe-Cl bound Y157F CDO at pH ~7.0 in the presence of azide Method: X-RAY DIFFRACTION / Resolution: 1.3 Å PDB-4xez: cysteine dioxygenase variant - Y157F at pH 8.0 with dithionite Method: X-RAY DIFFRACTION / Resolution: 1.2469 Å PDB-4xf0: cysteine dioxygenase variant - C93A at pH 8.0 with cysteine Method: X-RAY DIFFRACTION / Resolution: 1.3994 Å PDB-4xf1: cysteine dioxygenase variant - Y157F at pH 8.0 with cysteine Method: X-RAY DIFFRACTION / Resolution: 1.55 Å PDB-4xf3: cysteine dioxygenase variant - Y157F at pH 8.0 with cysteine and dithionite Method: X-RAY DIFFRACTION / Resolution: 1.55 Å PDB-4xf4: Cysteine dioxygenase at pH 8.0 in complex with homocysteine Method: X-RAY DIFFRACTION / Resolution: 1.3485 Å PDB-4xf9: cysteine dioxygenase variant - C93A at pH 8.0 in complex with homocysteine Method: X-RAY DIFFRACTION / Resolution: 1.3 Å PDB-4xfb: cysteine dioxygenase variant - C93A at pH 8.0 unliganded Method: X-RAY DIFFRACTION / Resolution: 1.35 Å PDB-4xfc: cysteine dioxygenase variant - Y157F at pH 6.2 unliganded Method: X-RAY DIFFRACTION / Resolution: 1.351 Å PDB-4xff: cysteine dioxygenase variant - Y157F at pH 6.2 with dithionite Method: X-RAY DIFFRACTION / Resolution: 1.25 Å PDB-4xfg: cysteine dioxygenase variant - C93A at pH 6.2 with cysteine Method: X-RAY DIFFRACTION / Resolution: 1.401 Å PDB-4xfh: cysteine dioxygenase variant - Y157F at pH 6.2 with cysteine Method: X-RAY DIFFRACTION / Resolution: 1.35 Å PDB-4xfi: cysteine dioxygenase variant - Y157F at pH 6.2 with homocysteine Method: X-RAY DIFFRACTION / Resolution: 1.4 Å PDB-5i0r: D-cysteine bound C93A mutant of Cysteine Dioxygenase at pH 8 Method: X-RAY DIFFRACTION / Resolution: 1.35 Å PDB-5i0s: Thiosulfate bound Cysteine Dioxygenase at pH 6.2 Method: X-RAY DIFFRACTION / Resolution: 1.3 Å PDB-5i0t: Thiosulfate bound Cysteine Dioxygenase at pH 6.8 Method: X-RAY DIFFRACTION / Resolution: 1.37 Å PDB-5i0u: Incompletely interpreted D-cysteine soak of Cysteine Dioxygenase at pH 7.0 Method: X-RAY DIFFRACTION / Resolution: 1.25 Å
Chemicals	ChemComp-FE: Unknown entry / Iron ChemComp-CL: Unknown entry / Chloride ChemComp-HOH: WATER / Water ChemComp-HCS: 2-AMINO-4-MERCAPTO-BUTYRIC ACID / Homocysteine ChemComp-AZI: AZIDE ION / Azide ChemComp-THJ: THIOSULFATE / Thiosulfate ChemComp-CYS: CYSTEINE / Cysteine ChemComp-DCY: D-CYSTEINE / Cysteine
Source	rattus norvegicus (Norway rat)
Keywords	OXIDOREDUCTASE / Cupin Fold / cysteine to cysteine sulfinic acid catalysis / Cytosol / catalyzes oxidation / cysteine to cysteine sulfinate / C93-Y157 crosslink / thiol dioxygenase / cupin-fold / D-cysteine / catalysis oxidation / thiosulfate