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Structure paper

TitleMolecular basis for the substrate specificity and catalytic mechanism of thymine-7-hydroxylase in fungi
Journal, issue, pagesNucleic Acids Res., Vol. 43, Page 10026-10038, Year 2015
Publish dateJun 17, 2015 (structure data deposition date)
AuthorsLi, W. / Zhang, T. / Ding, J.
External linksNucleic Acids Res. / PubMed:26429971
MethodsX-ray diffraction
Resolution2.05 - 2.35 Å
Structure data

PDB-5c3o:
Crystal structure of the C-terminal truncated Neurospora crassa T7H (NcT7HdeltaC) in apo form
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-5c3p:
Crystal structure of the full-length Neurospora crassa T7H in complex with alpha-KG
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5c3q:
Crystal structure of the full-length Neurospora crassa T7H in complex with alpha-KG and thymine (T)
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-5c3r:
Crystal structure of the full-length Neurospora crassa T7H in complex with alpha-KG and 5-hydroxymethyluracil (5hmU)
Method: X-RAY DIFFRACTION / Resolution: 2.35 Å

PDB-5c3s:
Crystal structure of the full-length Neurospora crassa T7H in complex with alpha-KG and 5-formyluracil (5fU)
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

Chemicals

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-CA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-NI:
NICKEL (II) ION

ChemComp-AKG:
2-OXOGLUTARIC ACID

ChemComp-TDR:
THYMINE

ChemComp-HMU:
5-HYDROXYMETHYL URACIL

ChemComp-FYU:
2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-carbaldehyde

Source
  • neurospora crassa (fungus)
KeywordsOXIDOREDUCTASE / dioxygenase / apo form / DSBH fold / cofactor / substrate A / substrate B / substrate C

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