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Structure paper

TitlePotent dual inhibitors of Plasmodium falciparum M1 and M17 aminopeptidases through optimization of S1 pocket interactions.
Journal, issue, pagesEur. J. Med. Chem., Vol. 110, Page 43-64, Year 2016
Publish dateMay 19, 2015 (structure data deposition date)
AuthorsDrinkwater, N. / Vinh, N.B. / Mistry, S.N. / Bamert, R.S. / Ruggeri, C. / Holleran, J.P. / Loganathan, S. / Paiardini, A. / Charman, S.A. / Powell, A.K. ...Drinkwater, N. / Vinh, N.B. / Mistry, S.N. / Bamert, R.S. / Ruggeri, C. / Holleran, J.P. / Loganathan, S. / Paiardini, A. / Charman, S.A. / Powell, A.K. / Avery, V.M. / McGowan, S. / Scammells, P.J.
External linksEur. J. Med. Chem. / PubMed:26807544
MethodsX-ray diffraction
Resolution1.8 - 2.7 Å
Structure data

PDB-4zw3:
X-ray crystal structure of PfA-M1 in complex with hydroxamic acid-based inhibitor 9b
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-4zw5:
X-ray crystal structure of PfA-M1 in complex with hydroxamic acid-based inhibitor 9f
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-4zw6:
X-ray crystal structure of PfA-M1 in complex with hydroxamic acid-based inhibitor 9q
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-4zw7:
X-ray crystal structure of PfA-M1 in complex with hydroxamic acid-based inhibitor 9m
Method: X-RAY DIFFRACTION / Resolution: 1.95 Å

PDB-4zw8:
X-ray crystal structure of PfA-M1 in complex with hydroxamic acid-based inhibitor 9r
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-4zx3:
X-ray crystal structure of PfA-M1 in complex with hydroxamic acid-based inhibitor 10b
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-4zx4:
X-ray crystal structure of PfA-M1 in complex with hydroxamic acid-based inhibitor 10o
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-4zx5:
X-ray crystal structure of PfA-M1 in complex with hydroxamic acid-based inhibitor 10q
Method: X-RAY DIFFRACTION / Resolution: 1.95 Å

PDB-4zx6:
X-ray crystal structure of PfA-M1 in complex with hydroxamic acid-based inhibitor 10s
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-4zx8:
X-ray crystal structure of PfA-M17 in complex with hydroxamic acid-based inhibitor 9b
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

PDB-4zx9:
X-ray crystal structure of PfA-M17 in complex with hydroxamic acid-based inhibitor 10b
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-4zy0:
X-ray crystal structure of PfA-M17 in complex with hydroxamic acid-based inhibitor 10q
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-4zy1:
X-ray crystal structure of PfA-M17 in complex with hydroxamic acid-based inhibitor 10r
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-4zy2:
X-ray crystal structure of PfA-M17 in complex with hydroxamic acid-based inhibitor 10o
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-4zyq:
X-ray crystal structure of PfA-M17 in complex with hydroxamic acid-based inhibitor 10s
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

Chemicals

ChemComp-4S9:
tert-butyl [(1S)-1-(4-bromophenyl)-2-(hydroxyamino)-2-oxoethyl]carbamate

ChemComp-ZN:
Unknown entry

ChemComp-GOL:
GLYCEROL

ChemComp-MG:
Unknown entry

ChemComp-PO4:
PHOSPHATE ION

ChemComp-HOH:
WATER

ChemComp-4SA:
tert-butyl [(1S)-1-(biphenyl-4-yl)-2-(hydroxyamino)-2-oxoethyl]carbamate

ChemComp-4SY:
tert-butyl {(1S)-2-(hydroxyamino)-1-[4-(1-methyl-1H-pyrazol-4-yl)phenyl]-2-oxoethyl}carbamate

ChemComp-DMS:
DIMETHYL SULFOXIDE / DMSO, precipitant*YM

ChemComp-4SZ:
tert-butyl [(1S)-2-(hydroxyamino)-2-oxo-1-(3',4',5'-trifluorobiphenyl-4-yl)ethyl]carbamate

ChemComp-4T2:
tert-butyl {(1S)-2-(hydroxyamino)-1-[3'-(N'-hydroxycarbamimidoyl)biphenyl-4-yl]-2-oxoethyl}carbamate

ChemComp-4TK:
N-[(1R)-1-(4-bromophenyl)-2-(hydroxyamino)-2-oxoethyl]-2,2-dimethylpropanamide

ChemComp-4TL:
N-[(1R)-2-(hydroxyamino)-2-oxo-1-(3',4',5'-trifluorobiphenyl-4-yl)ethyl]-2,2-dimethylpropanamide

ChemComp-4TM:
N-{(1R)-2-(hydroxyamino)-2-oxo-1-[4-(thiophen-3-yl)phenyl]ethyl}-2,2-dimethylpropanamide

ChemComp-4U6:
N-{(1R)-2-(hydroxyamino)-1-[3'-(N'-hydroxycarbamimidoyl)biphenyl-4-yl]-2-oxoethyl}-2,2-dimethylpropanamide

ChemComp-4TY:
tert-butyl [(1R)-1-(4-bromophenyl)-2-(hydroxyamino)-2-oxoethyl]carbamate

ChemComp-CO3:
CARBONATE ION

ChemComp-1PE:
PENTAETHYLENE GLYCOL / precipitant*YM

ChemComp-SO4:
SULFATE ION

ChemComp-4U5:
N-{(1R)-2-(hydroxyamino)-1-[4-(1-methyl-1H-pyrazol-4-yl)phenyl]-2-oxoethyl}-2,2-dimethylpropanamide

Source
  • plasmodium falciparum (isolate fcb1 / columbia) (eukaryote)
  • plasmodium falciparum (malaria parasite P. falciparum)
  • plasmodium falciparum fcb1/columbia (eukaryote)
KeywordsHYDROLASE/HYDROLASE inhibitor / M1 ALANYL-AMINOPEPTIDASE / PROTEASE / INHIBITOR / HYDROXAMIC ACID / HYDROLASE-HYDROLASE inhibitor complex / M17 LEUCYL-AMINOPEPTIDASE

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