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Structure paper

TitleStructural basis for self-assembly of a cytolytic pore lined by protein and lipid
Journal, issue, pagesNat Commun, Vol. 6, Page 6337-6337, Year 2015
Publish dateAug 23, 2012 (structure data deposition date)
AuthorsTanaka, K. / Caaveiro, J.M.M. / Morante, K. / Gonzalez-Manas, J.M. / Tsumoto, K.
External linksNat Commun / PubMed:25716479
MethodsX-ray diffraction
Resolution1.57 - 3.14 Å
Structure data

PDB-3vwi:
High resolution crystal structure of FraC in the monomeric form
Method: X-RAY DIFFRACTION / Resolution: 1.7 Å

PDB-3w9p:
Crystal structure of monomeric FraC (second crystal form)
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-4tsl:
Crystal structure of FraC with POC bound (crystal form I)
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-4tsn:
Crystal structure of FraC with POC bound (crystal form II)
Method: X-RAY DIFFRACTION / Resolution: 1.57 Å

PDB-4tso:
Crystal structure of FraC with DHPC bound (crystal form I)
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-4tsp:
Crystal structure of FraC with DHPC bound (crystal form II)
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-4tsq:
Crystal structure of FraC with DHPC bound (crystal form III)
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-4tsy:
Crystal structure of FraC with lipids
Method: X-RAY DIFFRACTION / Resolution: 3.14 Å

Chemicals

ChemComp-CL:
Unknown entry

ChemComp-NH4:
AMMONIUM ION

ChemComp-SO4:
SULFATE ION

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

ChemComp-PC:
PHOSPHOCHOLINE

ChemComp-FMT:
FORMIC ACID

ChemComp-ACT:
ACETATE ION

ChemComp-HXG:
1,2-dihexanoyl-sn-glycero-3-phosphocholine

ChemComp-PO4:
PHOSPHATE ION

ChemComp-SCN:
THIOCYANATE ION

ChemComp-HXJ:
2-[[(E,2S,3R)-2-(hexanoylamino)-3-oxidanyl-dec-4-enoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium

ChemComp-HTO:
HEPTANE-1,2,3-TRIOL

Source
  • actinia fragacea (sea anemone)
KeywordsTOXIN / beta-sandwich / amphipathic alpha-helix / actinoporin / pore-forming toxin / citolysin / Membrane lipids / secreted protein / LIPID RAFT / cytolysin / Phosphocholine / Lipid-protein interaction / actinoporin pore-forming toxin / Membrane / lipids Phosphocholine

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