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Structure paper

TitleStructural and Mutational Studies on Substrate Specificity and Catalysis of Salmonella typhimurium D-Cysteine Desulfhydrase.
Journal, issue, pagesPlos One, Vol. 7, Page e36267-e36267, Year 2012
Publish dateJan 11, 2012 (structure data deposition date)
AuthorsBharath, S.R. / Bisht, S. / Harijan, R.K. / Savithri, H.S. / Murthy, M.R.N.
External linksPlos One / PubMed:22574144
MethodsX-ray diffraction
Resolution1.67 - 3.3 Å
Structure data

PDB-4d8t:
Crystal structure of D-Cysteine desulfhydrase from Salmonella typhimurium at 2.2 A resolution
Method: X-RAY DIFFRACTION / Resolution: 2.28 Å

PDB-4d8u:
Crystal structure of D-Cysteine desulfhydrase from Salmonella typhimurium at 3.3 A in monoclinic space group with 8 subunits in the asymmetric unit
Method: X-RAY DIFFRACTION / Resolution: 3.3 Å

PDB-4d8w:
Salmonella typhimurium D-Cysteine desulfhydrase soaked with D-cys shows pyruvate bound 4 A away from active site
Method: X-RAY DIFFRACTION / Resolution: 2.01 Å

PDB-4d92:
Salmonella typhimurium D-Cysteine desulfhydrase soaked with beta-chloro-D-alanine shows pyruvate bound 4 A away from active site
Method: X-RAY DIFFRACTION / Resolution: 2.22 Å

PDB-4d96:
D-Cysteine desulfhydrase from Salmonella typhimurium complexed with 1-amino-1-carboxycyclopropane (ACC)
Method: X-RAY DIFFRACTION / Resolution: 2.09 Å

PDB-4d97:
Salmonella typhimurium D-Cysteine desulfhydrase with D-ser bound at active site
Method: X-RAY DIFFRACTION / Resolution: 1.77 Å

PDB-4d99:
Salmonella typhimurium D-Cysteine desulfhydrase with L-ser bound non-covalently at the active site
Method: X-RAY DIFFRACTION / Resolution: 2.01 Å

PDB-4d9b:
Pyridoxamine 5' phosphate (PMP) bound form of Salmonella typhimurium D-Cysteine desulfhydrase obtained after co-crystallization with D-cycloserine
Method: X-RAY DIFFRACTION / Resolution: 1.67 Å

PDB-4d9c:
PMP bound form of Salmonella typhimurium D-Cysteine desulfhydrase obtained after co-crystallization with L-cycloserine
Method: X-RAY DIFFRACTION / Resolution: 1.97 Å

PDB-4d9e:
D-Cysteine desulfhydrase from Salmonella typhimurium complexed with L-cycloserine (LCS)
Method: X-RAY DIFFRACTION / Resolution: 2.47 Å

PDB-4d9f:
D-Cysteine desulfhydrase from Salmonella typhimurium complexed with D-cycloserine (DCS)
Method: X-RAY DIFFRACTION / Resolution: 2.61 Å

Chemicals

ChemComp-SO4:
SULFATE ION

ChemComp-CL:
Unknown entry

ChemComp-BEN:
BENZAMIDINE

ChemComp-HOH:
WATER

ChemComp-PO4:
PHOSPHATE ION

ChemComp-PYR:
PYRUVIC ACID

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-5PA:
N-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-Y-LMETHYL]-1-AMINO-CYCLOPROPANECARBOXYLIC ACID

ChemComp-DSN:
D-SERINE

ChemComp-SER:
SERINE

ChemComp-NA:
Unknown entry

ChemComp-PMP:
4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE

ChemComp-LCS:
[5-hydroxy-6-methyl-4-({[(4E)-3-oxo-1,2-oxazolidin-4-ylidene]amino}methyl)pyridin-3-yl]methyl dihydrogen phosphate

ChemComp-DCS:
D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE

Source
  • salmonella typhimurium (bacteria)
KeywordsLYASE / Fold type II PLP-dependent enzyme / Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily / tryptophan synthase beta subunit like family / PLP dependent enzyme / Fold type II PLP-dependent enzyme or tryptophan synthase beta subunit like family

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