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Structure paper

TitleCrystal structures of penicillin-binding protein 6 from Escherichia coli.
Journal, issue, pagesJ. Am. Chem. Soc., Vol. 131, Page 14345-14354, Year 2009
Publish dateAug 27, 2009 (structure data deposition date)
AuthorsChen, Y. / Zhang, W. / Shi, Q. / Hesek, D. / Lee, M. / Mobashery, S. / Shoichet, B.K.
External linksJ. Am. Chem. Soc. / PubMed:19807181
MethodsX-ray diffraction
Resolution1.8 - 2.1 Å
Structure data

PDB-3it9:
Crystal structure of Penicillin-Binding Protein 6 (PBP6) from E. coli in apo state
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-3ita:
Crystal structure of Penicillin-Binding Protein 6 (PBP6) from E. coli in acyl-enzyme complex with ampicillin
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-3itb:
Crystal structure of Penicillin-Binding Protein 6 (PBP6) from E. coli in complex with a substrate fragment
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

Chemicals

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-AIX:
(2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid

ChemComp-AIC:
(2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC / antibiotic*YM

ChemComp-AMV:
methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucopyranoside

Source
  • escherichia coli (E. coli)
  • synthetic construct (others)
KeywordsHYDROLASE / Penicillin-Binding Protein / PBP6 / DD-carboxypeptidase / peptidoglycan / Carboxypeptidase / Cell inner membrane / Cell membrane / Cell shape / Cell wall biogenesis/degradation / Membrane / Peptidoglycan synthesis / Protease / PPenicillin-Binding Protein / BP6 / ampicillin / acyl-enzyme complex / substrate fragment

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