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Structure paper

Title3-Nitropropionic Acid Is a Suicide Inhibitor of Mitochondrial Respiration That, upon Oxidation by Complex II, Forms a Covalent Adduct with a Catalytic Base Arginine in the Active Site of the Enzyme
Journal, issue, pagesJ. Biol. Chem., Vol. 281, Page 5965-5972, Year 2006
Publish dateFeb 1, 2005 (structure data deposition date)
AuthorsHuang, L. / Sun, G. / Cobessi, D. / Wang, A.C. / Shen, J.T. / Tung, E.Y. / Anderson, V.E. / Berry, E.A.
External linksJ. Biol. Chem. / PubMed:16371358
MethodsX-ray diffraction
Resolution2.06 - 2.33 Å
Structure data

PDB-1yq3:
Avian respiratory complex ii with oxaloacetate and ubiquinone
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-1yq4:
Avian respiratory complex ii with 3-nitropropionate and ubiquinone
Method: X-RAY DIFFRACTION / Resolution: 2.33 Å

PDB-2fbw:
Avian respiratory complex II with carboxin bound
Method: X-RAY DIFFRACTION / Resolution: 2.06 Å

Chemicals

ChemComp-FAD:
FLAVIN-ADENINE DINUCLEOTIDE / FAD*YM

ChemComp-TEO:
MALATE LIKE INTERMEDIATE


ChemComp, No image

ChemComp-UNL:
Unknown ligand

ChemComp-FES:
FE2/S2 (INORGANIC) CLUSTER

ChemComp-SF4:
IRON/SULFUR CLUSTER

ChemComp-F3S:
FE3-S4 CLUSTER

ChemComp-UQ:
Coenzyme Q10, (2Z,6E,10Z,14E,18E,22E,26Z)-isomer

ChemComp-GOL:
GLYCEROL

ChemComp-JZR:
hexyl beta-D-glucopyranoside

ChemComp-HEM:
PROTOPORPHYRIN IX CONTAINING FE

ChemComp-PEE:
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine / DOPE, phospholipid*YM

ChemComp-HOH:
WATER

ChemComp-3NP:
3-NITROPROPANOIC ACID / inhibitor, agonist, toxin*YM

ChemComp-Y3P:
(~{Z})-2-oxidanylbut-2-enedioic acid

ChemComp-K:
Unknown entry

ChemComp-AZI:
AZIDE ION

ChemComp-NA:
Unknown entry

ChemComp-CBE:
2-METHYL-N-PHENYL-5,6-DIHYDRO-1,4-OXATHIINE-3-CARBOXAMIDE

ChemComp-BOG:
octyl beta-D-glucopyranoside / detergent*YM

ChemComp-UMQ:
UNDECYL-MALTOSIDE / detergent*YM

Source
  • gallus gallus (chicken)
KeywordsOXIDOREDUCTASE / COMPLEX II / MEMBRANE PROTEIN / HEME PROTEIN / IRON SULFUR PROTEIN / CYTOCHROME B / REDOX ENZYME / RESPIRATORY CHAIN / OXALOACETATE UBIQUINONE / OXALOACETATE NITROPROPIONATE UBIQUINONE

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