[English] 日本語
Yorodumi Papers
- Database of articles cited by EMDB/PDB/SASBDB data -

+
Search query

Keywords
Structure methods
Author
Journal
IF

-
Structure paper

TitleAssembly and gating mechanism of native AMPA receptors from the cerebellum
Journal, issue, pagesCell Res., Year 2026
Publish dateAug 22, 2024 (structure data deposition date)
AuthorsLi X / Li R / Wei Y / Chen J / Zhao J / Wang W / Li N / Wang L / Hu T / Dong Y ...Li X / Li R / Wei Y / Chen J / Zhao J / Wang W / Li N / Wang L / Hu T / Dong Y / Zhu Y / Wei C / Li L / Zhang W / Huang Z / Zhao Y
External linksCell Res. / Search PubMed
MethodsEM (single particle)
Resolution3.2 - 9.53 Å
Structure data

61250

9j92

EMDB-61250, PDB-9j92:
Native GluA1/GluA4-CNIH3 complex in resting state
Method: EM (single particle) / Resolution: 4.6 Å

61251

9j93

EMDB-61251, PDB-9j93:
Native GluA1/GluA4 ATD dimer binding with 1D8 and 11B8
Method: EM (single particle) / Resolution: 3.54 Å

61252

9j94

EMDB-61252, PDB-9j94:
Native GluA1/GluA4-CNIH3 complex in active state
Method: EM (single particle) / Resolution: 3.65 Å

61253

9j95

EMDB-61253, PDB-9j95:
Native GluA1/GluA4-CNIH3 complex in desensitized state
Method: EM (single particle) / Resolution: 4.26 Å

EMDB-61278: Native GluA1/GluA4 AMPA receptor in resting state
Method: EM (single particle) / Resolution: 3.58 Å

EMDB-61332: native AMPA receptors from cerebellum
Method: EM (single particle) / Resolution: 9.53 Å

EMDB-61333: native AMPA receptors from cerebellum
Method: EM (single particle) / Resolution: 8.64 Å

EMDB-61334: native AMPA receptors from cerebellum
Method: EM (single particle) / Resolution: 7.18 Å

EMDB-61335: native AMPA receptors from cerebellum
Method: EM (single particle) / Resolution: 3.81 Å

EMDB-61336: native AMPA receptors from cerebellum
Method: EM (single particle) / Resolution: 3.94 Å

EMDB-61337: native AMPA receptors from cerebellum
Method: EM (single particle) / Resolution: 4.49 Å

66576

9x57

EMDB-66576, PDB-9x57:
The LBD-TMD structure of GluA4-1D8 complex
Method: EM (single particle) / Resolution: 3.5 Å

66577

9x58

EMDB-66577, PDB-9x58:
The GluA4-ATD in Complex with the 1D8-Fab
Method: EM (single particle) / Resolution: 3.2 Å

66939

9xjl

EMDB-66939, PDB-9xjl:
The LBD-TMD structure of homomeric GluA4 AMPA receptor
Method: EM (single particle) / Resolution: 3.8 Å

66940

9xjm

EMDB-66940, PDB-9xjm:
The ATD structure of homomeric GluA4 AMPA receptor
Method: EM (single particle) / Resolution: 4.0 Å

Chemicals


ChemComp, No image

ChemComp-DQC:
Unknown entry

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-GGL:
GAMMA-L-GLUTAMIC ACID

PDB-1ea4:
TRANSCRIPTIONAL REPRESSOR COPG/22bp dsDNA COMPLEX

Source
  • sus scrofa (pig)
  • mus musculus (house mouse)
  • Mus abbotti (Abbott's mouse)
KeywordsMEMBRANE PROTEIN / AMPA receptor / native / GluA1 / GluA4 / CNIH3 / resting state / ATD 1D8 / 11B8 / AMPAR / LBD / TMD / active state / desensitized state / 1D8

+
About Yorodumi Papers

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi Papers

Database of articles cited by EMDB/PDB/SASBDB data

  • Database of articles cited by EMDB, PDB, and SASBDB entries
  • Using PubMed data

Related info.:EMDB / PDB / SASBDB / Yorodumi / EMN Papers / Changes in new EM Navigator and Yorodumi

Read more